RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 MYL5Q02045 173 aa11.23□□□□□ -0.61
USP39-215ENST00000481409 LRRC63Q05C16 580 aa11.23□□□□□ -0.61
USP39-215ENST00000481409 PTPN11Q06124 597 aaPredicted RBP11.23□□□□□ -0.61
USP39-215ENST00000481409 PAK1Q13153 545 aa11.23□□□□□ -0.61
USP39-215ENST00000481409 MAPK7Q13164 816 aa11.23□□□□□ -0.61
USP39-215ENST00000481409 HSP90AA2PQ14568 343 aaPredicted RBP11.23□□□□□ -0.61
USP39-215ENST00000481409 ODR4Q5SWX8 454 aa11.23□□□□□ -0.61
USP39-215ENST00000481409 TMEM63BQ5T3F8 832 aa11.23□□□□□ -0.61
USP39-215ENST00000481409 L1TD1Q5T7N2 865 aaKnown RBP11.23□□□□□ -0.61
USP39-215ENST00000481409 SESTD1Q86VW0 696 aa11.23□□□□□ -0.61
USP39-215ENST00000481409 MYOCDQ8IZQ8 938 aa11.23□□□□□ -0.61
USP39-215ENST00000481409 GOLGA5Q8TBA6 731 aa11.23□□□□□ -0.61
USP39-215ENST00000481409 ZNF507Q8TCN5 953 aa11.23□□□□□ -0.61
USP39-215ENST00000481409 NOC3LQ8WTT2 800 aaKnown RBP11.23□□□□□ -0.61
USP39-215ENST00000481409 DNAJC25Q9H1X3 360 aa11.23□□□□□ -0.61
USP39-215ENST00000481409 RNPEPQ9H4A4 650 aa11.23□□□□□ -0.61
USP39-215ENST00000481409 TMEM206Q9H813 350 aa11.23□□□□□ -0.61
USP39-215ENST00000481409 MRPL44Q9H9J2 332 aaKnown RBP11.23□□□□□ -0.61
USP39-215ENST00000481409 TELO2Q9Y4R8 837 aa11.23□□□□□ -0.61
USP39-215ENST00000481409 ZBTB42B2RXF5 422 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 HSPA8P11142 646 aaKnown RBP11.22□□□□□ -0.61
USP39-215ENST00000481409 INSRRP14616 1297 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 CCNE1P24864 410 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 CCND3P30281 292 aaPredicted RBP11.22□□□□□ -0.61
USP39-215ENST00000481409 ARL2P36404 184 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 PRCPP42785 496 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 PSEN2P49810 448 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 NCKAP1LP55160 1127 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 STK4Q13043 487 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 PPFIA1Q13136 1202 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 TFDP1Q14186 410 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 MFSD10Q14728 455 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 IQCB1Q15051 598 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 SLC9C1Q4G0N8 1177 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 FAM102BQ5T8I3 360 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 CENPPQ6IPU0 288 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 FBXO46Q6PJ61 603 aaPredicted RBP11.22□□□□□ -0.61
USP39-215ENST00000481409 EPM2AIP1Q7L775 607 aaPredicted RBP11.22□□□□□ -0.61
USP39-215ENST00000481409 ZNF720Q7Z2F6 126 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 GAS2L3Q86XJ1 694 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 SFR1Q86XK3 245 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 TRIM50Q86XT4 487 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 DAW1Q8N136 415 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 KIAA0895Q8NCT3 520 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 TMEM174Q8WUU8 243 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 PSPC1Q8WXF1 523 aaKnown RBP11.22□□□□□ -0.61
USP39-215ENST00000481409 KAT6AQ92794 2004 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 KAT2BQ92831 832 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 TSG101Q99816 390 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 NFKBIZQ9BYH8 718 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 C2orf40Q9H1Z8 148 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 ZHX3Q9H4I2 956 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 CBX8Q9HC52 389 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 XPNPEP1Q9NQW7 623 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 EXOC7Q9UPT5 735 aa11.22□□□□□ -0.61
USP39-215ENST00000481409 A0A087WWV3 80 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 NPHP3-ACAD11A0A0J9YXS1 232 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 MBLAC1A4D2B0 266 aaPredicted RBP11.21□□□□□ -0.61
USP39-215ENST00000481409 PDXKO00764 312 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 C22orf31O95567 290 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 MYL3P08590 195 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 ZNF286BP0CG31 522 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 MARK3P27448 753 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 HOXC8P31273 242 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 EFNA5P52803 228 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 GTF2BQ00403 316 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 TRIM32Q13049 653 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 MYBPC2Q14324 1141 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 PCBP1Q15365 356 aaKnown RBP eCLIP11.21□□□□□ -0.61
USP39-215ENST00000481409 GRIK4Q16099 956 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 NFIL3Q16649 462 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 KNOP1Q1ED39 458 aaKnown RBP11.21□□□□□ -0.61
USP39-215ENST00000481409 KIAA0753Q2KHM9 967 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 EDRF1Q3B7T1 1238 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 SPATA1Q5VX52 437 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 CCSAPQ6IQ19 270 aaPredicted RBP11.21□□□□□ -0.61
USP39-215ENST00000481409 NFRKBQ6P4R8 1299 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 FAM43BQ6ZT52 329 aaPredicted RBP11.21□□□□□ -0.61
USP39-215ENST00000481409 C11orf57Q6ZUT1 292 aaPredicted RBP11.21□□□□□ -0.61
USP39-215ENST00000481409 NME8Q8N427 588 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 P2RX5Q93086 422 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 FIZ1Q96SL8 496 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 STRA6Q9BX79 667 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.21□□□□□ -0.61
USP39-215ENST00000481409 TMEM134Q9H6X4 195 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 SLC39A2Q9NP94 309 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 PAK6Q9NQU5 681 aaPredicted RBP11.21□□□□□ -0.61
USP39-215ENST00000481409 TRAF3IP3Q9Y228 551 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 GDAQ9Y2T3 454 aa11.21□□□□□ -0.61
USP39-215ENST00000481409 SCN10AQ9Y5Y9 1956 aa11.21□□□□□ -0.62
USP39-215ENST00000481409 SMIM35A0A1B0GVV1 85 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 RSPH10B2B2RC85 870 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 CALUO43852 315 aaPredicted RBP11.2□□□□□ -0.62
USP39-215ENST00000481409 PPP1R37O75864 691 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 GCNT3O95395 438 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 RSPH10BP0C881 870 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 RPL13P26373 211 aaKnown RBP11.2□□□□□ -0.62
USP39-215ENST00000481409 KLRC1P26715 233 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 ADAM17P78536 824 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 SPAG1Q07617 926 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms