RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 ARHGAP27Q6ZUM4 889 aa11.78□□□□□ -0.52
VPS52-217ENST00000478934 CPXCR1Q8N123 301 aa11.78□□□□□ -0.52
VPS52-217ENST00000478934 PIK3R5Q8WYR1 880 aa11.78□□□□□ -0.52
VPS52-217ENST00000478934 GPR88Q9GZN0 384 aa11.78□□□□□ -0.52
VPS52-217ENST00000478934 LUC7LQ9NQ29 371 aaKnown RBP11.78□□□□□ -0.52
VPS52-217ENST00000478934 IPO5O00410 1097 aaKnown RBP11.77□□□□□ -0.52
VPS52-217ENST00000478934 NPM3O75607 178 aaKnown RBP11.77□□□□□ -0.52
VPS52-217ENST00000478934 VIL1P09327 827 aaKnown RBP11.77□□□□□ -0.52
VPS52-217ENST00000478934 ZBTB48P10074 688 aaPredicted RBP11.77□□□□□ -0.52
VPS52-217ENST00000478934 PSMC2P35998 433 aaKnown RBP11.77□□□□□ -0.52
VPS52-217ENST00000478934 ERVK-9P63128 1117 aa11.77□□□□□ -0.52
VPS52-217ENST00000478934 GUCY1A3Q02108 690 aa11.77□□□□□ -0.52
VPS52-217ENST00000478934 PPP2R5CQ13362 524 aa11.77□□□□□ -0.52
VPS52-217ENST00000478934 NNTQ13423 1086 aa11.77□□□□□ -0.52
VPS52-217ENST00000478934 DLGAP5Q15398 846 aa11.77□□□□□ -0.52
VPS52-217ENST00000478934 TAF4BQ92750 862 aa11.77□□□□□ -0.52
VPS52-217ENST00000478934 NEUROG2Q9H2A3 272 aa11.77□□□□□ -0.52
VPS52-217ENST00000478934 RANBP17Q9H2T7 1088 aaKnown RBP11.77□□□□□ -0.52
VPS52-217ENST00000478934 ACP6Q9NPH0 428 aa11.77□□□□□ -0.52
VPS52-217ENST00000478934 SEPT11Q9NVA2 429 aaKnown RBP11.77□□□□□ -0.52
VPS52-217ENST00000478934 F8VZ95 297 aa11.77□□□□□ -0.53
VPS52-217ENST00000478934 HOXA7P31268 230 aaPredicted RBP11.77□□□□□ -0.53
VPS52-217ENST00000478934 FLT3P36888 993 aa11.77□□□□□ -0.53
VPS52-217ENST00000478934 MAPK7Q13164 816 aa11.77□□□□□ -0.53
VPS52-217ENST00000478934 NBPF9Q3BBW0 867 aa11.77□□□□□ -0.53
VPS52-217ENST00000478934 PHLDB3Q6NSJ2 640 aa11.77□□□□□ -0.53
VPS52-217ENST00000478934 DAAM2Q86T65 1068 aa11.77□□□□□ -0.53
VPS52-217ENST00000478934 PACS2Q86VP3 889 aa11.77□□□□□ -0.53
VPS52-217ENST00000478934 IFT20Q8IY31 132 aa11.77□□□□□ -0.53
VPS52-217ENST00000478934 ARHGEF26Q96DR7 871 aa11.77□□□□□ -0.53
VPS52-217ENST00000478934 FAM84AQ96KN4 292 aa11.77□□□□□ -0.53
VPS52-217ENST00000478934 CELF4Q9BZC1 486 aaKnown RBP11.77□□□□□ -0.53
VPS52-217ENST00000478934 METTL14Q9HCE5 456 aaKnown RBP11.77□□□□□ -0.53
VPS52-217ENST00000478934 TUFT1Q9NNX1 390 aa11.77□□□□□ -0.53
VPS52-217ENST00000478934 TSKSQ9UJT2 592 aa11.77□□□□□ -0.53
VPS52-217ENST00000478934 NENFQ9UMX5 172 aa11.77□□□□□ -0.53
VPS52-217ENST00000478934 SLC16A3O15427 465 aaKnown RBP11.76□□□□□ -0.53
VPS52-217ENST00000478934 H2AFZP0C0S5 128 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 PRKCIP41743 596 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 SPP2Q13103 211 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 AADACL2Q6P093 401 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 RSBN1LQ6PCB5 846 aaPredicted RBP11.76□□□□□ -0.53
VPS52-217ENST00000478934 EMBQ6PCB8 327 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 H2AFVQ71UI9 128 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 SYCP3Q8IZU3 236 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 SLC20A1Q8WUM9 679 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 KAT5Q92993 513 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 CNKSR1Q969H4 720 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 SH3GL2Q99962 352 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 GOPCQ9HD26 462 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 GPRC5CQ9NQ84 441 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 PPP1R9AQ9ULJ8 1098 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 FOXN3O00409 490 aaPredicted RBP11.76□□□□□ -0.53
VPS52-217ENST00000478934 SLC26A4O43511 780 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 EXOC3O60645 756 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 FLOT1O75955 427 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 GAP43P17677 238 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 HPDP32754 393 aaPredicted RBP11.76□□□□□ -0.53
VPS52-217ENST00000478934 PPFIA1Q13136 1202 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 CFAP58Q5T655 872 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 PEX26Q7Z412 305 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 MAATS1Q7Z4T9 603 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 FAM151AQ8WW52 585 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 CBWD1Q9BRT8 395 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 FAM107BQ9H098 131 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 INTS2Q9H0H0 1204 aaKnown RBP11.76□□□□□ -0.53
VPS52-217ENST00000478934 VCPKMTQ9H867 229 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 LRRC4CQ9HCJ2 640 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 KCNH7Q9NS40 1196 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 TMOD2Q9NZR1 351 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 AMACRQ9UHK6 382 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 HERC5Q9UII4 1024 aaKnown RBP11.76□□□□□ -0.53
VPS52-217ENST00000478934 TMEM59LQ9UK28 342 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 NOC2LQ9Y3T9 749 aaKnown RBP11.76□□□□□ -0.53
VPS52-217ENST00000478934 COL4A5P29400 1685 aa11.76□□□□□ -0.53
VPS52-217ENST00000478934 GOLGA8IPA6NC78 632 aa11.75□□□□□ -0.53
VPS52-217ENST00000478934 GOLGA8JA6NMD2 632 aa11.75□□□□□ -0.53
VPS52-217ENST00000478934 BUB1BO60566 1050 aaPredicted RBP11.75□□□□□ -0.53
VPS52-217ENST00000478934 SHOX2O60902 331 aaPredicted RBP11.75□□□□□ -0.53
VPS52-217ENST00000478934 ECHS1P30084 290 aa11.75□□□□□ -0.53
VPS52-217ENST00000478934 SOX5P35711 763 aa11.75□□□□□ -0.53
VPS52-217ENST00000478934 LIG3P49916 1009 aa11.75□□□□□ -0.53
VPS52-217ENST00000478934 ITGB3BPQ13352 177 aaPredicted RBP11.75□□□□□ -0.53
VPS52-217ENST00000478934 ZNF211Q13398 564 aaPredicted RBP11.75□□□□□ -0.53
VPS52-217ENST00000478934 ZNF746Q6NUN9 644 aaPredicted RBP11.75□□□□□ -0.53
VPS52-217ENST00000478934 PADI6Q6TGC4 694 aa11.75□□□□□ -0.53
VPS52-217ENST00000478934 LARGE2Q8N3Y3 721 aa11.75□□□□□ -0.53
VPS52-217ENST00000478934 SLC35G2Q8TBE7 412 aa11.75□□□□□ -0.53
VPS52-217ENST00000478934 CAVIN3Q969G5 261 aa11.75□□□□□ -0.53
VPS52-217ENST00000478934 RNPC3Q96LT9 517 aaKnown RBP11.75□□□□□ -0.53
VPS52-217ENST00000478934 NACC1Q96RE7 527 aa11.75□□□□□ -0.53
VPS52-217ENST00000478934 TRIM31Q9BZY9 425 aa11.75□□□□□ -0.53
VPS52-217ENST00000478934 ZNF646O15015 1829 aaPredicted RBP11.75□□□□□ -0.53
VPS52-217ENST00000478934 ZNF536O15090 1300 aa11.75□□□□□ -0.53
VPS52-217ENST00000478934 FRMPD4Q14CM0 1322 aa11.75□□□□□ -0.53
VPS52-217ENST00000478934 ARHGEF35A5YM69 484 aa11.75□□□□□ -0.53
VPS52-217ENST00000478934 K7ENM7 598 aa11.75□□□□□ -0.53
VPS52-217ENST00000478934 EIF3HO15372 352 aaKnown RBP eCLIP11.75□□□□□ -0.53
VPS52-217ENST00000478934 EGFRP00533 1210 aa11.75□□□□□ -0.53
VPS52-217ENST00000478934 STAT1P42224 750 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms