RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 GATMP50440 423 aa20.09■□□□□ 0.81
UPF3A-203ENST00000474056 DSC3Q14574 896 aa20.09■□□□□ 0.81
UPF3A-203ENST00000474056 SKIV2LQ15477 1246 aaKnown RBP20.09■□□□□ 0.81
UPF3A-203ENST00000474056 PAN2Q504Q3 1202 aaKnown RBP20.09■□□□□ 0.81
UPF3A-203ENST00000474056 ZNF710Q8N1W2 664 aa20.09■□□□□ 0.81
UPF3A-203ENST00000474056 NLRP7Q8WX94 980 aa20.09■□□□□ 0.81
UPF3A-203ENST00000474056 CEP170P1Q96L14 293 aa20.09■□□□□ 0.81
UPF3A-203ENST00000474056 FOXP1Q9H334 677 aaPredicted RBP20.09■□□□□ 0.81
UPF3A-203ENST00000474056 TTC12Q9H892 705 aaPredicted RBP20.09■□□□□ 0.81
UPF3A-203ENST00000474056 LRFN2Q9ULH4 789 aa20.09■□□□□ 0.81
UPF3A-203ENST00000474056 PCDHA12Q9UN75 941 aa20.09■□□□□ 0.81
UPF3A-203ENST00000474056 H3BNC9 293 aa20.08■□□□□ 0.81
UPF3A-203ENST00000474056 ZBTB39O15060 712 aa20.08■□□□□ 0.81
UPF3A-203ENST00000474056 SLITRK3O94933 977 aa20.08■□□□□ 0.81
UPF3A-203ENST00000474056 DARSP14868 501 aaKnown RBP20.08■□□□□ 0.81
UPF3A-203ENST00000474056 MCM7P33993 719 aa20.08■□□□□ 0.81
UPF3A-203ENST00000474056 CTNNB1P35222 781 aa20.08■□□□□ 0.81
UPF3A-203ENST00000474056 GPM6BQ13491 265 aa20.08■□□□□ 0.81
UPF3A-203ENST00000474056 SLC24A5Q71RS6 500 aa20.08■□□□□ 0.81
UPF3A-203ENST00000474056 CMTR2Q8IYT2 770 aaKnown RBP20.08■□□□□ 0.81
UPF3A-203ENST00000474056 CLP1Q92989 425 aaKnown RBP20.08■□□□□ 0.81
UPF3A-203ENST00000474056 TBC1D32Q96NH3 1257 aa20.08■□□□□ 0.81
UPF3A-203ENST00000474056 EIF2AK1Q9BQI3 630 aaKnown RBP20.08■□□□□ 0.81
UPF3A-203ENST00000474056 C1orf112Q9NSG2 853 aa20.08■□□□□ 0.81
UPF3A-203ENST00000474056 BMP2KQ9NSY1 1161 aaPredicted RBP20.08■□□□□ 0.81
UPF3A-203ENST00000474056 MRPL42Q9Y6G3 142 aaKnown RBP20.08■□□□□ 0.81
UPF3A-203ENST00000474056 A0A087WZ62 844 aa20.07■□□□□ 0.8
UPF3A-203ENST00000474056 POTEMA6NI47 508 aa20.07■□□□□ 0.8
UPF3A-203ENST00000474056 CSDE1O75534 798 aaKnown RBP20.07■□□□□ 0.8
UPF3A-203ENST00000474056 YWHABP31946 246 aaKnown RBP20.07■□□□□ 0.8
UPF3A-203ENST00000474056 DNM2P50570 870 aa20.07■□□□□ 0.8
UPF3A-203ENST00000474056 FAM43BQ6ZT52 329 aaPredicted RBP20.07■□□□□ 0.8
UPF3A-203ENST00000474056 RHPN2Q8IUC4 686 aa20.07■□□□□ 0.8
UPF3A-203ENST00000474056 TPH2Q8IWU9 490 aa20.07■□□□□ 0.8
UPF3A-203ENST00000474056 TMX3Q96JJ7 454 aa20.07■□□□□ 0.8
UPF3A-203ENST00000474056 FDXACB1Q9BRP7 624 aaPredicted RBP20.07■□□□□ 0.8
UPF3A-203ENST00000474056 DHX33Q9H6R0 707 aaKnown RBP20.07■□□□□ 0.8
UPF3A-203ENST00000474056 ZSWIM4Q9H7M6 989 aa20.07■□□□□ 0.8
UPF3A-203ENST00000474056 SUCLA2Q9P2R7 463 aaPredicted RBP20.07■□□□□ 0.8
UPF3A-203ENST00000474056 PCDHB7Q9Y5E2 793 aa20.07■□□□□ 0.8
UPF3A-203ENST00000474056 C5orf67F2Z3F1 127 aa20.06■□□□□ 0.8
UPF3A-203ENST00000474056 BMPR1AP36894 532 aa20.06■□□□□ 0.8
UPF3A-203ENST00000474056 POLGP54098 1239 aaPredicted RBP20.06■□□□□ 0.8
UPF3A-203ENST00000474056 GNL2Q13823 731 aaKnown RBP20.06■□□□□ 0.8
UPF3A-203ENST00000474056 ZNF174Q15697 407 aa20.06■□□□□ 0.8
UPF3A-203ENST00000474056 TJAP1Q5JTD0 557 aa20.06■□□□□ 0.8
UPF3A-203ENST00000474056 NOSTRINQ8IVI9 506 aa20.06■□□□□ 0.8
UPF3A-203ENST00000474056 KSR1Q8IVT5 923 aa20.06■□□□□ 0.8
UPF3A-203ENST00000474056 ATXN2LQ8WWM7 1075 aaKnown RBP20.06■□□□□ 0.8
UPF3A-203ENST00000474056 SLC7A3Q8WY07 619 aa20.06■□□□□ 0.8
UPF3A-203ENST00000474056 HSD17B14Q9BPX1 270 aa20.06■□□□□ 0.8
UPF3A-203ENST00000474056 JPH2Q9BR39 696 aaPredicted RBP20.06■□□□□ 0.8
UPF3A-203ENST00000474056 RWDD3Q9Y3V2 267 aa20.06■□□□□ 0.8
UPF3A-203ENST00000474056 PPME1Q9Y570 386 aa20.06■□□□□ 0.8
UPF3A-203ENST00000474056 FAM189BP81408 668 aa20.05■□□□□ 0.8
UPF3A-203ENST00000474056 TFF2Q03403 129 aa20.05■□□□□ 0.8
UPF3A-203ENST00000474056 XKR9Q5GH70 373 aa20.05■□□□□ 0.8
UPF3A-203ENST00000474056 TTC38Q5R3I4 469 aa20.05■□□□□ 0.8
UPF3A-203ENST00000474056 FAM102BQ5T8I3 360 aa20.05■□□□□ 0.8
UPF3A-203ENST00000474056 OTUD6AQ7L8S5 288 aa20.05■□□□□ 0.8
UPF3A-203ENST00000474056 NEK9Q8TD19 979 aa20.05■□□□□ 0.8
UPF3A-203ENST00000474056 MRPL38Q96DV4 380 aaKnown RBP20.05■□□□□ 0.8
UPF3A-203ENST00000474056 GCOM2Q9BZD3 368 aaPredicted RBP20.05■□□□□ 0.8
UPF3A-203ENST00000474056 XIRP2A4UGR9 3374 aa20.04■□□□□ 0.8
UPF3A-203ENST00000474056 RB1P06400 928 aa20.04■□□□□ 0.8
UPF3A-203ENST00000474056 ZSCAN20P17040 1043 aaPredicted RBP20.04■□□□□ 0.8
UPF3A-203ENST00000474056 RFC5P40937 340 aa20.04■□□□□ 0.8
UPF3A-203ENST00000474056 MRPS5P82675 430 aaKnown RBP20.04■□□□□ 0.8
UPF3A-203ENST00000474056 CDC42EP1Q00587 391 aa20.04■□□□□ 0.8
UPF3A-203ENST00000474056 NBR1Q14596 966 aa20.04■□□□□ 0.8
UPF3A-203ENST00000474056 EMC2Q15006 297 aa20.04■□□□□ 0.8
UPF3A-203ENST00000474056 PTPROQ16827 1216 aa20.04■□□□□ 0.8
UPF3A-203ENST00000474056 ZNF410Q86VK4 478 aa20.04■□□□□ 0.8
UPF3A-203ENST00000474056 TMEM143Q96AN5 459 aa20.04■□□□□ 0.8
UPF3A-203ENST00000474056 NLRP4Q96MN2 994 aa20.04■□□□□ 0.8
UPF3A-203ENST00000474056 ASB2Q96Q27 587 aa20.04■□□□□ 0.8
UPF3A-203ENST00000474056 C11orf84Q9BUA3 381 aaPredicted RBP20.04■□□□□ 0.8
UPF3A-203ENST00000474056 ELAC1Q9H777 363 aaKnown RBP20.04■□□□□ 0.8
UPF3A-203ENST00000474056 TMEM161AQ9NX61 479 aa20.04■□□□□ 0.8
UPF3A-203ENST00000474056 COL4A3BPQ9Y5P4 624 aa20.04■□□□□ 0.8
UPF3A-203ENST00000474056 TBKBP1A7MCY6 615 aa20.03■□□□□ 0.8
UPF3A-203ENST00000474056 LYPLA2O95372 231 aa20.03■□□□□ 0.8
UPF3A-203ENST00000474056 OR52Z1P0C646 297 aa20.03■□□□□ 0.8
UPF3A-203ENST00000474056 FGFR1P11362 822 aa20.03■□□□□ 0.8
UPF3A-203ENST00000474056 U2AF2P26368 475 aaKnown RBP eCLIP20.03■□□□□ 0.84e-7■■■■■ 39.1
UPF3A-203ENST00000474056 ORC2Q13416 577 aaPredicted RBP20.03■□□□□ 0.8
UPF3A-203ENST00000474056 IL27Q8NEV9 243 aa20.03■□□□□ 0.8
UPF3A-203ENST00000474056 ATP6V0A4Q9HBG4 840 aa20.03■□□□□ 0.8
UPF3A-203ENST00000474056 IFT122Q9HBG6 1241 aa20.03■□□□□ 0.8
UPF3A-203ENST00000474056 XPNPEP1Q9NQW7 623 aa20.03■□□□□ 0.8
UPF3A-203ENST00000474056 RNF216Q9NWF9 866 aaPredicted RBP20.03■□□□□ 0.8
UPF3A-203ENST00000474056 HCSTQ9UBK5 93 aa20.03■□□□□ 0.8
UPF3A-203ENST00000474056 TTC28Q96AY4 2481 aa20.02■□□□□ 0.8
UPF3A-203ENST00000474056 GRM6O15303 877 aa20.02■□□□□ 0.8
UPF3A-203ENST00000474056 TECP42680 631 aa20.02■□□□□ 0.8
UPF3A-203ENST00000474056 TRAPPC10P48553 1259 aa20.02■□□□□ 0.8
UPF3A-203ENST00000474056 ECHDC2Q86YB7 292 aa20.02■□□□□ 0.8
UPF3A-203ENST00000474056 EXOC8Q8IYI6 725 aa20.02■□□□□ 0.8
UPF3A-203ENST00000474056 PSPC1Q8WXF1 523 aaKnown RBP20.02■□□□□ 0.8
UPF3A-203ENST00000474056 MTRQ99707 1265 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms