RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 METAP2P50579 478 aaKnown RBP eCLIP20.93■□□□□ 0.94
SHH-205ENST00000472308 TMTC3Q6ZXV5 915 aa20.93■□□□□ 0.94
SHH-205ENST00000472308 ZNF598Q86UK7 904 aaKnown RBP20.93■□□□□ 0.94
SHH-205ENST00000472308 CCDC82Q8N4S0 544 aa20.93■□□□□ 0.94
SHH-205ENST00000472308 METTL13Q8N6R0 699 aa20.93■□□□□ 0.94
SHH-205ENST00000472308 DTWD2Q8NBA8 298 aa20.93■□□□□ 0.94
SHH-205ENST00000472308 RNF169Q8NCN4 708 aa20.93■□□□□ 0.94
SHH-205ENST00000472308 SLC22A17Q8WUG5 538 aa20.93■□□□□ 0.94
SHH-205ENST00000472308 ADAMTS10Q9H324 1103 aa20.93■□□□□ 0.94
SHH-205ENST00000472308 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.92■□□□□ 0.94
SHH-205ENST00000472308 PRC1O43663 620 aa20.92■□□□□ 0.94
SHH-205ENST00000472308 CA8P35219 290 aa20.92■□□□□ 0.94
SHH-205ENST00000472308 CLCN3P51790 818 aa20.92■□□□□ 0.94
SHH-205ENST00000472308 BCAR1P56945 870 aa20.92■□□□□ 0.94
SHH-205ENST00000472308 WWC2Q6AWC2 1192 aa20.92■□□□□ 0.94
SHH-205ENST00000472308 SWSAP1Q6NVH7 229 aa20.92■□□□□ 0.94
SHH-205ENST00000472308 TMC5Q6UXY8 1006 aa20.92■□□□□ 0.94
SHH-205ENST00000472308 LINC01465Q8N7H1 131 aa20.92■□□□□ 0.94
SHH-205ENST00000472308 HELQQ8TDG4 1101 aa20.92■□□□□ 0.94
SHH-205ENST00000472308 ANO3Q9BYT9 981 aa20.92■□□□□ 0.94
SHH-205ENST00000472308 NLRP11P59045 1033 aaKnown RBP20.91■□□□□ 0.94
SHH-205ENST00000472308 TDGQ13569 410 aa20.91■□□□□ 0.94
SHH-205ENST00000472308 VPS52Q8N1B4 723 aa20.91■□□□□ 0.94
SHH-205ENST00000472308 BCL7CQ8WUZ0 217 aaPredicted RBP20.91■□□□□ 0.94
SHH-205ENST00000472308 EPG5Q9HCE0 2579 aa20.91■□□□□ 0.94
SHH-205ENST00000472308 RIC8AQ9NPQ8 531 aa20.91■□□□□ 0.94
SHH-205ENST00000472308 DUSP12Q9UNI6 340 aa20.91■□□□□ 0.94
SHH-205ENST00000472308 IRAK3Q9Y616 596 aa20.91■□□□□ 0.94
SHH-205ENST00000472308 A0A0U1RQF3 1178 aa20.9■□□□□ 0.94
SHH-205ENST00000472308 FAM86B1E9PN63 330 aa20.9■□□□□ 0.94
SHH-205ENST00000472308 FAM86B2P0C5J1 330 aa20.9■□□□□ 0.94
SHH-205ENST00000472308 CHMLP26374 656 aa20.9■□□□□ 0.94
SHH-205ENST00000472308 SREBF1P36956 1147 aa20.9■□□□□ 0.94
SHH-205ENST00000472308 NFXL1Q6ZNB6 911 aa20.9■□□□□ 0.94
SHH-205ENST00000472308 SIX5Q8N196 739 aa20.9■□□□□ 0.94
SHH-205ENST00000472308 BBXQ8WY36 941 aaPredicted RBP20.9■□□□□ 0.94
SHH-205ENST00000472308 TMEM169Q96HH4 297 aa20.9■□□□□ 0.94
SHH-205ENST00000472308 RTP3Q9BQQ7 232 aa20.9■□□□□ 0.94
SHH-205ENST00000472308 MTA3Q9BTC8 594 aa20.9■□□□□ 0.94
SHH-205ENST00000472308 MAFBQ9Y5Q3 323 aaPredicted RBP20.9■□□□□ 0.94
SHH-205ENST00000472308 ZFHX4Q86UP3 3567 aa20.9■□□□□ 0.94
SHH-205ENST00000472308 CEP250Q9BV73 2442 aa20.89■□□□□ 0.94
SHH-205ENST00000472308 CCDC69A6NI79 296 aa20.89■□□□□ 0.93
SHH-205ENST00000472308 CTSAP10619 480 aa20.89■□□□□ 0.93
SHH-205ENST00000472308 ZSCAN20P17040 1043 aaPredicted RBP20.89■□□□□ 0.93
SHH-205ENST00000472308 EIF4BP23588 611 aaKnown RBP20.89■□□□□ 0.93
SHH-205ENST00000472308 ALDH7A1P49419 539 aaKnown RBP20.89■□□□□ 0.93
SHH-205ENST00000472308 MIS18BP1Q6P0N0 1132 aa20.89■□□□□ 0.93
SHH-205ENST00000472308 CASC1Q6TDU7 716 aa20.89■□□□□ 0.93
SHH-205ENST00000472308 NIPA1Q7RTP0 329 aa20.89■□□□□ 0.93
SHH-205ENST00000472308 GPR149Q86SP6 731 aa20.89■□□□□ 0.93
SHH-205ENST00000472308 CKAP2LQ8IYA6 745 aa20.89■□□□□ 0.93
SHH-205ENST00000472308 ZNF668Q96K58 619 aaPredicted RBP20.89■□□□□ 0.93
SHH-205ENST00000472308 KCNK12Q9HB15 430 aa20.89■□□□□ 0.93
SHH-205ENST00000472308 CNTNAP5Q8WYK1 1306 aa20.88■□□□□ 0.93
SHH-205ENST00000472308 IGLV3-22A0A075B6J6 115 aa20.88■□□□□ 0.93
SHH-205ENST00000472308 SGSM2O43147 1006 aa20.88■□□□□ 0.93
SHH-205ENST00000472308 FOSP01100 380 aaPredicted RBP20.88■□□□□ 0.93
SHH-205ENST00000472308 CALM1P0DP23 149 aa20.88■□□□□ 0.93
SHH-205ENST00000472308 CALM2P0DP24 149 aa20.88■□□□□ 0.93
SHH-205ENST00000472308 CALM3P0DP25 149 aa20.88■□□□□ 0.93
SHH-205ENST00000472308 FGFR4P22455 802 aa20.88■□□□□ 0.93
SHH-205ENST00000472308 TTC22Q5TAA0 569 aa20.88■□□□□ 0.93
SHH-205ENST00000472308 TRMT1LQ7Z2T5 733 aaKnown RBP20.88■□□□□ 0.93
SHH-205ENST00000472308 CABP7Q86V35 215 aa20.88■□□□□ 0.93
SHH-205ENST00000472308 LRRC71Q8N4P6 559 aa20.88■□□□□ 0.93
SHH-205ENST00000472308 RUFY2Q8WXA3 655 aa20.88■□□□□ 0.93
SHH-205ENST00000472308 MAP4K1Q92918 833 aa20.88■□□□□ 0.93
SHH-205ENST00000472308 ACSF2Q96CM8 615 aaPredicted RBP20.88■□□□□ 0.93
SHH-205ENST00000472308 VN1R3Q9BXE9 311 aa20.88■□□□□ 0.93
SHH-205ENST00000472308 MRPL9Q9BYD2 267 aaKnown RBP20.88■□□□□ 0.93
SHH-205ENST00000472308 FBXL21Q9UKT6 434 aa20.88■□□□□ 0.93
SHH-205ENST00000472308 AKT3Q9Y243 479 aa20.88■□□□□ 0.93
SHH-205ENST00000472308 OTOGLQ3ZCN5 2332 aa20.88■□□□□ 0.93
SHH-205ENST00000472308 NARSO43776 548 aaKnown RBP20.87■□□□□ 0.93
SHH-205ENST00000472308 LMNAP02545 664 aaKnown RBP20.87■□□□□ 0.93
SHH-205ENST00000472308 LIFRP42702 1097 aa20.87■□□□□ 0.93
SHH-205ENST00000472308 CLK2P49760 499 aaKnown RBP20.87■□□□□ 0.93
SHH-205ENST00000472308 POLGP54098 1239 aaPredicted RBP20.87■□□□□ 0.93
SHH-205ENST00000472308 NAPAP54920 295 aa20.87■□□□□ 0.93
SHH-205ENST00000472308 CCDC149Q6ZUS6 474 aa20.87■□□□□ 0.93
SHH-205ENST00000472308 OTOP3Q7RTS5 596 aa20.87■□□□□ 0.93
SHH-205ENST00000472308 DGLUCYQ7Z3D6 616 aa20.87■□□□□ 0.93
SHH-205ENST00000472308 TMTC2Q8N394 836 aa20.87■□□□□ 0.93
SHH-205ENST00000472308 FANCBQ8NB91 859 aa20.87■□□□□ 0.93
SHH-205ENST00000472308 SFXN1Q9H9B4 322 aa20.87■□□□□ 0.93
SHH-205ENST00000472308 RBM8AQ9Y5S9 174 aaKnown RBP20.87■□□□□ 0.93
SHH-205ENST00000472308 R4GN57 208 aa20.87■□□□□ 0.93
SHH-205ENST00000472308 CACNA1BQ00975 2339 aa20.87■□□□□ 0.93
SHH-205ENST00000472308 KMT2BQ9UMN6 2715 aaPredicted RBP20.86■□□□□ 0.93
SHH-205ENST00000472308 KRBA1A5PL33 1030 aa20.86■□□□□ 0.93
SHH-205ENST00000472308 IPO5O00410 1097 aaKnown RBP20.86■□□□□ 0.93
SHH-205ENST00000472308 N4BP1O75113 896 aaKnown RBP20.86■□□□□ 0.93
SHH-205ENST00000472308 ZC3H11AO75152 810 aaKnown RBP eCLIP20.86■□□□□ 0.93
SHH-205ENST00000472308 DARSP14868 501 aaKnown RBP20.86■□□□□ 0.93
SHH-205ENST00000472308 MCM5P33992 734 aa20.86■□□□□ 0.93
SHH-205ENST00000472308 GPC3P51654 580 aa20.86■□□□□ 0.93
SHH-205ENST00000472308 ADCY7P51828 1080 aa20.86■□□□□ 0.93
SHH-205ENST00000472308 AAMPQ13685 434 aa20.86■□□□□ 0.93
SHH-205ENST00000472308 BMS1Q14692 1282 aaKnown RBP20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms