RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 KIF3AQ9Y496 699 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 PCDHA8Q9Y5H6 950 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 ABCB11O95342 1321 aa5.39□□□□□ -1.55
SF3B1-208ENST00000470268 TLR2O60603 784 aa5.39□□□□□ -1.55
SF3B1-208ENST00000470268 CFBP00751 764 aa5.39□□□□□ -1.55
SF3B1-208ENST00000470268 XBP1P17861 261 aa5.39□□□□□ -1.55
SF3B1-208ENST00000470268 KRT2P35908 639 aa5.39□□□□□ -1.55
SF3B1-208ENST00000470268 TOB1P50616 345 aaPredicted RBP5.39□□□□□ -1.55
SF3B1-208ENST00000470268 ADCY7P51828 1080 aa5.39□□□□□ -1.55
SF3B1-208ENST00000470268 RPS6P62753 249 aaKnown RBP5.39□□□□□ -1.55
SF3B1-208ENST00000470268 GHRHRQ02643 423 aa5.39□□□□□ -1.55
SF3B1-208ENST00000470268 TRIM29Q14134 588 aa5.39□□□□□ -1.55
SF3B1-208ENST00000470268 GRM2Q14416 872 aa5.39□□□□□ -1.55
SF3B1-208ENST00000470268 JAKMIP3Q5VZ66 844 aa5.39□□□□□ -1.55
SF3B1-208ENST00000470268 NXPE4Q6UWF7 544 aa5.39□□□□□ -1.55
SF3B1-208ENST00000470268 C17orf99Q6UX52 265 aa5.39□□□□□ -1.55
SF3B1-208ENST00000470268 SLC30A10Q6XR72 485 aa5.39□□□□□ -1.55
SF3B1-208ENST00000470268 MICALL1Q8N3F8 863 aa5.39□□□□□ -1.55
SF3B1-208ENST00000470268 CCDC148Q8NFR7 591 aa5.39□□□□□ -1.55
SF3B1-208ENST00000470268 FTOQ9C0B1 505 aaKnown RBP eCLIP5.39□□□□□ -1.55
SF3B1-208ENST00000470268 FOXP1Q9H334 677 aaPredicted RBP5.39□□□□□ -1.55
SF3B1-208ENST00000470268 C6orf50Q9HD87 102 aa5.39□□□□□ -1.55
SF3B1-208ENST00000470268 A1CFQ9NQ94 594 aaKnown RBP5.39□□□□□ -1.55
SF3B1-208ENST00000470268 LATS2Q9NRM7 1088 aa5.39□□□□□ -1.55
SF3B1-208ENST00000470268 MORF4L1Q9UBU8 362 aa5.39□□□□□ -1.55
SF3B1-208ENST00000470268 MRPL11Q9Y3B7 192 aaKnown RBP5.39□□□□□ -1.55
SF3B1-208ENST00000470268 DDX49Q9Y6V7 483 aaKnown RBP5.39□□□□□ -1.55
SF3B1-208ENST00000470268 ASTN1O14525 1302 aa5.39□□□□□ -1.55
SF3B1-208ENST00000470268 SMCHD1A6NHR9 2005 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 ZBTB42B2RXF5 422 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 CA12O43570 354 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 CALML3P27482 149 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 CTGFP29279 349 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 GNA11P29992 359 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 MCM4P33991 863 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 MAP2K2P36507 400 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 GCLCP48506 637 aaPredicted RBP5.38□□□□□ -1.55
SF3B1-208ENST00000470268 HSD17B4P51659 736 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 NUCB2P80303 420 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 BAATQ14032 418 aaPredicted RBP5.38□□□□□ -1.55
SF3B1-208ENST00000470268 FAM110CQ1W6H9 321 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 GALNT17Q6IS24 598 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 NSMFQ6X4W1 530 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 PIK3AP1Q6ZUJ8 805 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 NOSTRINQ8IVI9 506 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 FAM177A1Q8N128 213 aaPredicted RBP5.38□□□□□ -1.55
SF3B1-208ENST00000470268 REXO1Q8N1G1 1221 aaKnown RBP5.38□□□□□ -1.55
SF3B1-208ENST00000470268 DNAJC5GQ8N7S2 189 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 GLIS3Q8NEA6 775 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 GPRC5AQ8NFJ5 357 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 CCDC12Q8WUD4 166 aaPredicted RBP5.38□□□□□ -1.55
SF3B1-208ENST00000470268 CUL5Q93034 780 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 SPACA7Q96KW9 195 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 ACAD9Q9H845 621 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 DZANK1Q9NVP4 752 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 CYP39A1Q9NYL5 469 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 CTDP1Q9Y5B0 961 aaPredicted RBP5.38□□□□□ -1.55
SF3B1-208ENST00000470268 TRPA1O75762 1119 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 TBC1D8O95759 1140 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 XRCC5P13010 732 aaKnown RBP5.38□□□□□ -1.55
SF3B1-208ENST00000470268 GSTT1P30711 240 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 MRPL12P52815 198 aaKnown RBP5.38□□□□□ -1.55
SF3B1-208ENST00000470268 SAFBQ15424 915 aaKnown RBP eCLIP5.38□□□□□ -1.55
SF3B1-208ENST00000470268 INF2Q27J81 1249 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 PRSS36Q5K4E3 855 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 CHST13Q8NET6 341 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 IL31RAQ8NI17 732 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 SYTL5Q8TDW5 730 aaPredicted RBP5.38□□□□□ -1.55
SF3B1-208ENST00000470268 TBCKQ8TEA7 893 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 CRYGNQ8WXF5 182 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 NSUN5Q96P11 429 aaKnown RBP5.38□□□□□ -1.55
SF3B1-208ENST00000470268 TAAR1Q96RJ0 339 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 LIN7BQ9HAP6 207 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 RNF186Q9NXI6 227 aa5.38□□□□□ -1.55
SF3B1-208ENST00000470268 DNAJB12Q9NXW2 375 aaKnown RBP5.38□□□□□ -1.55
SF3B1-208ENST00000470268 COL11A1P12107 1806 aaPredicted RBP5.38□□□□□ -1.55
SF3B1-208ENST00000470268 GCOM1H8Y6P7 765 aaPredicted RBP5.37□□□□□ -1.55
SF3B1-208ENST00000470268 SLC25A27O95847 323 aa5.37□□□□□ -1.55
SF3B1-208ENST00000470268 PGK2P07205 417 aa5.37□□□□□ -1.55
SF3B1-208ENST00000470268 POLR2MP0CAP2 368 aa5.37□□□□□ -1.55
SF3B1-208ENST00000470268 ST13P50502 369 aaKnown RBP5.37□□□□□ -1.55
SF3B1-208ENST00000470268 UBXN2AP68543 259 aa5.37□□□□□ -1.55
SF3B1-208ENST00000470268 FANCCQ00597 558 aa5.37□□□□□ -1.55
SF3B1-208ENST00000470268 CNTN2Q02246 1040 aa5.37□□□□□ -1.55
SF3B1-208ENST00000470268 TRAF1Q13077 416 aa5.37□□□□□ -1.55
SF3B1-208ENST00000470268 TKFCQ3LXA3 575 aa5.37□□□□□ -1.55
SF3B1-208ENST00000470268 RNF207Q6ZRF8 634 aa5.37□□□□□ -1.55
SF3B1-208ENST00000470268 BRAPQ7Z569 592 aa5.37□□□□□ -1.55
SF3B1-208ENST00000470268 CCNJLQ8IV13 435 aa5.37□□□□□ -1.55
SF3B1-208ENST00000470268 SHCBP1Q8NEM2 672 aa5.37□□□□□ -1.55
SF3B1-208ENST00000470268 FGD4Q96M96 766 aa5.37□□□□□ -1.55
SF3B1-208ENST00000470268 USP28Q96RU2 1077 aa5.37□□□□□ -1.55
SF3B1-208ENST00000470268 TCF12Q99081 682 aa5.37□□□□□ -1.55
SF3B1-208ENST00000470268 OSMRQ99650 979 aa5.37□□□□□ -1.55
SF3B1-208ENST00000470268 ANO3Q9BYT9 981 aa5.37□□□□□ -1.55
SF3B1-208ENST00000470268 ARHGAP39Q9C0H5 1083 aa5.37□□□□□ -1.55
SF3B1-208ENST00000470268 ZSCAN16Q9H4T2 348 aaPredicted RBP5.37□□□□□ -1.55
SF3B1-208ENST00000470268 PNMA2Q9UL42 364 aa5.37□□□□□ -1.55
SF3B1-208ENST00000470268 STARD13Q9Y3M8 1113 aa5.37□□□□□ -1.55
SF3B1-208ENST00000470268 PCDHB6Q9Y5E3 794 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms