RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 ZNF618Q5T7W0 954 aa16.43■□□□□ 0.22
COL9A3-209ENST00000469852 TAF2Q6P1X5 1199 aa16.43■□□□□ 0.22
COL9A3-209ENST00000469852 KSR1Q8IVT5 923 aa16.43■□□□□ 0.22
COL9A3-209ENST00000469852 IQUBQ8NA54 791 aa16.43■□□□□ 0.22
COL9A3-209ENST00000469852 ASAP3Q8TDY4 903 aa16.43■□□□□ 0.22
COL9A3-209ENST00000469852 WNT8AQ9H1J5 351 aa16.43■□□□□ 0.22
COL9A3-209ENST00000469852 CDHR5Q9HBB8 845 aa16.43■□□□□ 0.22
COL9A3-209ENST00000469852 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.42■□□□□ 0.22
COL9A3-209ENST00000469852 RSPH10B2B2RC85 870 aa16.42■□□□□ 0.22
COL9A3-209ENST00000469852 KIAA0355O15063 1070 aa16.42■□□□□ 0.22
COL9A3-209ENST00000469852 EVI5O60447 810 aa16.42■□□□□ 0.22
COL9A3-209ENST00000469852 HIP1RO75146 1068 aa16.42■□□□□ 0.22
COL9A3-209ENST00000469852 ZNF202O95125 648 aa16.42■□□□□ 0.22
COL9A3-209ENST00000469852 RSPH10BP0C881 870 aa16.42■□□□□ 0.22
COL9A3-209ENST00000469852 CYP2C18P33260 490 aa16.42■□□□□ 0.22
COL9A3-209ENST00000469852 THPOP40225 353 aa16.42■□□□□ 0.22
COL9A3-209ENST00000469852 RBL2Q08999 1139 aa16.42■□□□□ 0.22
COL9A3-209ENST00000469852 MGAT3Q09327 533 aa16.42■□□□□ 0.22
COL9A3-209ENST00000469852 FAM102BQ5T8I3 360 aa16.42■□□□□ 0.22
COL9A3-209ENST00000469852 SV2BQ7L1I2 683 aa16.42■□□□□ 0.22
COL9A3-209ENST00000469852 RETREG2Q8NC44 543 aa16.42■□□□□ 0.22
COL9A3-209ENST00000469852 PRPF31Q8WWY3 499 aaKnown RBP16.42■□□□□ 0.22
COL9A3-209ENST00000469852 BSNDQ8WZ55 320 aa16.42■□□□□ 0.22
COL9A3-209ENST00000469852 REEP2Q9BRK0 252 aa16.42■□□□□ 0.22
COL9A3-209ENST00000469852 POLR3FQ9H1D9 316 aaPredicted RBP16.42■□□□□ 0.22
COL9A3-209ENST00000469852 PRO3102Q9H379 93 aa16.42■□□□□ 0.22
COL9A3-209ENST00000469852 HIPK3Q9H422 1215 aa16.42■□□□□ 0.22
COL9A3-209ENST00000469852 KBTBD4Q9NVX7 518 aa16.42■□□□□ 0.22
COL9A3-209ENST00000469852 SUCLA2Q9P2R7 463 aaPredicted RBP16.42■□□□□ 0.22
COL9A3-209ENST00000469852 AKT3Q9Y243 479 aa16.42■□□□□ 0.22
COL9A3-209ENST00000469852 RANBP2P49792 3224 aaKnown RBP16.42■□□□□ 0.22
COL9A3-209ENST00000469852 MYH11P35749 1972 aa16.42■□□□□ 0.22
COL9A3-209ENST00000469852 SFI1A8K8P3 1242 aa16.41■□□□□ 0.22
COL9A3-209ENST00000469852 CHRNA1P02708 482 aa16.41■□□□□ 0.22
COL9A3-209ENST00000469852 SLFN14P0C7P3 912 aa16.41■□□□□ 0.22
COL9A3-209ENST00000469852 SYN1P17600 705 aa16.41■□□□□ 0.22
COL9A3-209ENST00000469852 GUCY2CP25092 1073 aa16.41■□□□□ 0.22
COL9A3-209ENST00000469852 ARL2P36404 184 aa16.41■□□□□ 0.22
COL9A3-209ENST00000469852 AFMP43652 599 aa16.41■□□□□ 0.22
COL9A3-209ENST00000469852 CCL23P55773 120 aa16.41■□□□□ 0.22
COL9A3-209ENST00000469852 FAM160A1Q05DH4 1040 aa16.41■□□□□ 0.22
COL9A3-209ENST00000469852 GIT2Q14161 759 aa16.41■□□□□ 0.22
COL9A3-209ENST00000469852 MBTPS1Q14703 1052 aa16.41■□□□□ 0.22
COL9A3-209ENST00000469852 KIZQ2M2Z5 673 aa16.41■□□□□ 0.22
COL9A3-209ENST00000469852 KRBA2Q6ZNG9 492 aa16.41■□□□□ 0.22
COL9A3-209ENST00000469852 DYMQ7RTS9 669 aa16.41■□□□□ 0.22
COL9A3-209ENST00000469852 RPAINQ86UA6 219 aa16.41■□□□□ 0.22
COL9A3-209ENST00000469852 SCLYQ96I15 445 aa16.41■□□□□ 0.22
COL9A3-209ENST00000469852 JPH2Q9BR39 696 aaPredicted RBP16.41■□□□□ 0.22
COL9A3-209ENST00000469852 CUEDC2Q9H467 287 aa16.41■□□□□ 0.22
COL9A3-209ENST00000469852 ZMYND8Q9ULU4 1186 aaPredicted RBP16.41■□□□□ 0.22
COL9A3-209ENST00000469852 GPR32O75388 356 aa16.4■□□□□ 0.22
COL9A3-209ENST00000469852 PRR29P0C7W0 189 aa16.4■□□□□ 0.22
COL9A3-209ENST00000469852 GLRA2P23416 452 aa16.4■□□□□ 0.22
COL9A3-209ENST00000469852 TMOD1P28289 359 aa16.4■□□□□ 0.22
COL9A3-209ENST00000469852 GPC3P51654 580 aa16.4■□□□□ 0.22
COL9A3-209ENST00000469852 MRPS6P82932 125 aaKnown RBP16.4■□□□□ 0.22
COL9A3-209ENST00000469852 CAPSQ13938 189 aa16.4■□□□□ 0.22
COL9A3-209ENST00000469852 GPNMBQ14956 572 aa16.4■□□□□ 0.22
COL9A3-209ENST00000469852 IER5Q5VY09 327 aa16.4■□□□□ 0.22
COL9A3-209ENST00000469852 RHPN2Q8IUC4 686 aa16.4■□□□□ 0.22
COL9A3-209ENST00000469852 EXOC8Q8IYI6 725 aa16.4■□□□□ 0.22
COL9A3-209ENST00000469852 MCPH1Q8NEM0 835 aa16.4■□□□□ 0.22
COL9A3-209ENST00000469852 CAGE1Q8TC20 777 aa16.4■□□□□ 0.22
COL9A3-209ENST00000469852 DDX12PQ92771 950 aa16.4■□□□□ 0.22
COL9A3-209ENST00000469852 DNAJC19Q96DA6 116 aa16.4■□□□□ 0.22
COL9A3-209ENST00000469852 PAGE5Q96GU1 130 aa16.4■□□□□ 0.22
COL9A3-209ENST00000469852 MAP7D2Q96T17 732 aa16.4■□□□□ 0.22
COL9A3-209ENST00000469852 BLZF1Q9H2G9 400 aa16.4■□□□□ 0.22
COL9A3-209ENST00000469852 TNMDQ9H2S6 317 aa16.4■□□□□ 0.22
COL9A3-209ENST00000469852 ADAMTS10Q9H324 1103 aa16.4■□□□□ 0.22
COL9A3-209ENST00000469852 COL4A3BPQ9Y5P4 624 aa16.4■□□□□ 0.22
COL9A3-209ENST00000469852 CDY2AQ9Y6F7 541 aa16.4■□□□□ 0.22
COL9A3-209ENST00000469852 PITPNM1O00562 1244 aa16.39■□□□□ 0.21
COL9A3-209ENST00000469852 GAS2O43903 313 aaKnown RBP16.39■□□□□ 0.21
COL9A3-209ENST00000469852 TIMP1P01033 207 aa16.39■□□□□ 0.21
COL9A3-209ENST00000469852 SELPP16109 830 aa16.39■□□□□ 0.21
COL9A3-209ENST00000469852 MCM4P33991 863 aa16.39■□□□□ 0.21
COL9A3-209ENST00000469852 DNM2P50570 870 aa16.39■□□□□ 0.21
COL9A3-209ENST00000469852 NLRP11P59045 1033 aaKnown RBP16.39■□□□□ 0.21
COL9A3-209ENST00000469852 LAMTOR4Q0VGL1 99 aa16.39■□□□□ 0.21
COL9A3-209ENST00000469852 BFSP2Q13515 415 aa16.39■□□□□ 0.21
COL9A3-209ENST00000469852 CUL4BQ13620 913 aa16.39■□□□□ 0.21
COL9A3-209ENST00000469852 FAM26DQ5JW98 314 aa16.39■□□□□ 0.21
COL9A3-209ENST00000469852 LRRC8DQ7L1W4 858 aa16.39■□□□□ 0.21
COL9A3-209ENST00000469852 CEP57L1Q8IYX8 460 aa16.39■□□□□ 0.21
COL9A3-209ENST00000469852 CCDC155Q8N6L0 562 aa16.39■□□□□ 0.21
COL9A3-209ENST00000469852 TMEM40Q8WWA1 233 aa16.39■□□□□ 0.21
COL9A3-209ENST00000469852 TCP11Q8WWU5 503 aa16.39■□□□□ 0.21
COL9A3-209ENST00000469852 PSPC1Q8WXF1 523 aaKnown RBP16.39■□□□□ 0.21
COL9A3-209ENST00000469852 VWCEQ96DN2 955 aa16.39■□□□□ 0.21
COL9A3-209ENST00000469852 NLRP4Q96MN2 994 aa16.39■□□□□ 0.21
COL9A3-209ENST00000469852 OSMRQ99650 979 aa16.39■□□□□ 0.21
COL9A3-209ENST00000469852 PYM1Q9BRP8 204 aaKnown RBP16.39■□□□□ 0.21
COL9A3-209ENST00000469852 TRIM9Q9C026 710 aa16.39■□□□□ 0.21
COL9A3-209ENST00000469852 KCND2Q9NZV8 630 aa16.39■□□□□ 0.21
COL9A3-209ENST00000469852 GINS2Q9Y248 185 aa16.39■□□□□ 0.21
COL9A3-209ENST00000469852 A0A087WZ62 844 aa16.38■□□□□ 0.21
COL9A3-209ENST00000469852 CSDE1O75534 798 aaKnown RBP16.38■□□□□ 0.21
COL9A3-209ENST00000469852 KRT18P05783 430 aaKnown RBP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms