RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 PHLDB3Q6NSJ2 640 aa20.81■□□□□ 0.92
VIM-203ENST00000469543 LRRC57Q8N9N7 239 aa20.81■□□□□ 0.92
VIM-203ENST00000469543 GPR88Q9GZN0 384 aa20.81■□□□□ 0.92
VIM-203ENST00000469543 FRMPD4Q14CM0 1322 aa20.81■□□□□ 0.92
VIM-203ENST00000469543 SLC16A3O15427 465 aaKnown RBP20.81■□□□□ 0.92
VIM-203ENST00000469543 CEP104O60308 925 aa20.81■□□□□ 0.92
VIM-203ENST00000469543 HMGB2P26583 209 aaKnown RBP20.81■□□□□ 0.92
VIM-203ENST00000469543 ZNF131P52739 623 aa20.81■□□□□ 0.92
VIM-203ENST00000469543 RPS6KA1Q15418 735 aa20.81■□□□□ 0.92
VIM-203ENST00000469543 TAAR1Q96RJ0 339 aa20.81■□□□□ 0.92
VIM-203ENST00000469543 CBWD1Q9BRT8 395 aa20.81■□□□□ 0.92
VIM-203ENST00000469543 ACP6Q9NPH0 428 aa20.81■□□□□ 0.92
VIM-203ENST00000469543 F8VZ95 297 aa20.81■□□□□ 0.92
VIM-203ENST00000469543 GALCP54803 685 aa20.81■□□□□ 0.92
VIM-203ENST00000469543 UGCGQ16739 394 aa20.81■□□□□ 0.92
VIM-203ENST00000469543 PRAMEF18Q5VWM3 479 aa20.81■□□□□ 0.92
VIM-203ENST00000469543 HS2ST1Q7LGA3 356 aa20.81■□□□□ 0.92
VIM-203ENST00000469543 MIER3Q7Z3K6 550 aa20.81■□□□□ 0.92
VIM-203ENST00000469543 CAMKK2Q96RR4 588 aa20.81■□□□□ 0.92
VIM-203ENST00000469543 SEPT11Q9NVA2 429 aaKnown RBP20.81■□□□□ 0.92
VIM-203ENST00000469543 STK32BQ9NY57 414 aa20.81■□□□□ 0.92
VIM-203ENST00000469543 FEM1BQ9UK73 627 aa20.81■□□□□ 0.92
VIM-203ENST00000469543 K7ENM7 598 aa20.8■□□□□ 0.92
VIM-203ENST00000469543 EIF3DO15371 548 aaKnown RBP eCLIP20.8■□□□□ 0.92
VIM-203ENST00000469543 RAD51CO43502 376 aa20.8■□□□□ 0.92
VIM-203ENST00000469543 KRT14P02533 472 aa20.8■□□□□ 0.92
VIM-203ENST00000469543 MYCLP12524 364 aaPredicted RBP20.8■□□□□ 0.92
VIM-203ENST00000469543 DDX42Q86XP3 938 aaKnown RBP eCLIP20.8■□□□□ 0.92
VIM-203ENST00000469543 ACBD3Q9H3P7 528 aa20.8■□□□□ 0.92
VIM-203ENST00000469543 FRMD4BQ9Y2L6 1034 aa20.8■□□□□ 0.92
VIM-203ENST00000469543 TELO2Q9Y4R8 837 aa20.8■□□□□ 0.92
VIM-203ENST00000469543 IGSF9BQ9UPX0 1349 aa20.8■□□□□ 0.92
VIM-203ENST00000469543 PHF20L1A8MW92 1017 aa20.8■□□□□ 0.92
VIM-203ENST00000469543 SORBS3O60504 671 aa20.8■□□□□ 0.92
VIM-203ENST00000469543 PRKCIP41743 596 aa20.8■□□□□ 0.92
VIM-203ENST00000469543 DEFB132Q7Z7B7 95 aa20.8■□□□□ 0.92
VIM-203ENST00000469543 METTL13Q8N6R0 699 aa20.8■□□□□ 0.92
VIM-203ENST00000469543 USP38Q8NB14 1042 aa20.8■□□□□ 0.92
VIM-203ENST00000469543 TPCN2Q8NHX9 752 aa20.8■□□□□ 0.92
VIM-203ENST00000469543 STK24Q9Y6E0 443 aa20.8■□□□□ 0.92
VIM-203ENST00000469543 MYH11P35749 1972 aa20.79■□□□□ 0.92
VIM-203ENST00000469543 FOXN3O00409 490 aaPredicted RBP20.79■□□□□ 0.92
VIM-203ENST00000469543 KIF4AO95239 1232 aa20.79■□□□□ 0.92
VIM-203ENST00000469543 ICAM1P05362 532 aa20.79■□□□□ 0.92
VIM-203ENST00000469543 ASNSP08243 561 aa20.79■□□□□ 0.92
VIM-203ENST00000469543 ITGA4P13612 1032 aa20.79■□□□□ 0.92
VIM-203ENST00000469543 NPEPPSP55786 919 aa20.79■□□□□ 0.92
VIM-203ENST00000469543 SOX10P56693 466 aa20.79■□□□□ 0.92
VIM-203ENST00000469543 DAAM2Q86T65 1068 aa20.79■□□□□ 0.92
VIM-203ENST00000469543 RTKN2Q8IZC4 609 aa20.79■□□□□ 0.92
VIM-203ENST00000469543 ARL8AQ96BM9 186 aa20.79■□□□□ 0.92
VIM-203ENST00000469543 FAM84AQ96KN4 292 aa20.79■□□□□ 0.92
VIM-203ENST00000469543 KIFC3Q9BVG8 833 aa20.79■□□□□ 0.92
VIM-203ENST00000469543 ATAD5Q96QE3 1844 aa20.79■□□□□ 0.92
VIM-203ENST00000469543 GOLGA8IPA6NC78 632 aa20.79■□□□□ 0.92
VIM-203ENST00000469543 GOLGA8JA6NMD2 632 aa20.79■□□□□ 0.92
VIM-203ENST00000469543 FLOT1O75955 427 aa20.79■□□□□ 0.92
VIM-203ENST00000469543 ACTN2P35609 894 aa20.79■□□□□ 0.92
VIM-203ENST00000469543 STAT1P42224 750 aa20.79■□□□□ 0.92
VIM-203ENST00000469543 KCTD16Q68DU8 428 aa20.79■□□□□ 0.92
VIM-203ENST00000469543 CASKIN2Q8WXE0 1202 aa20.79■□□□□ 0.92
VIM-203ENST00000469543 DMAC2Q9NW81 257 aa20.79■□□□□ 0.92
VIM-203ENST00000469543 PSD3Q9NYI0 1048 aa20.79■□□□□ 0.92
VIM-203ENST00000469543 ZNRF3Q9ULT6 936 aa20.79■□□□□ 0.92
VIM-203ENST00000469543 BZW2Q9Y6E2 419 aaKnown RBP20.79■□□□□ 0.92
VIM-203ENST00000469543 H2AFZP0C0S5 128 aa20.78■□□□□ 0.92
VIM-203ENST00000469543 SOX5P35711 763 aa20.78■□□□□ 0.92
VIM-203ENST00000469543 GCLMP48507 274 aa20.78■□□□□ 0.92
VIM-203ENST00000469543 HSD17B4P51659 736 aa20.78■□□□□ 0.92
VIM-203ENST00000469543 RPS6P62753 249 aaKnown RBP20.78■□□□□ 0.92
VIM-203ENST00000469543 TKFCQ3LXA3 575 aa20.78■□□□□ 0.92
VIM-203ENST00000469543 PLA2G4FQ68DD2 849 aa20.78■□□□□ 0.92
VIM-203ENST00000469543 H2AFVQ71UI9 128 aa20.78■□□□□ 0.92
VIM-203ENST00000469543 ADAT2Q7Z6V5 191 aaKnown RBP20.78■□□□□ 0.92
VIM-203ENST00000469543 DDX47Q9H0S4 455 aaKnown RBP20.78■□□□□ 0.92
VIM-203ENST00000469543 LCMT1Q9UIC8 334 aa20.78■□□□□ 0.92
VIM-203ENST00000469543 ANKRD65E5RJM6 399 aa20.78■□□□□ 0.92
VIM-203ENST00000469543 PPP3CAQ08209 521 aa20.78■□□□□ 0.92
VIM-203ENST00000469543 FAM160B2Q86V87 743 aa20.78■□□□□ 0.92
VIM-203ENST00000469543 KAT5Q92993 513 aa20.78■□□□□ 0.92
VIM-203ENST00000469543 TSKSQ9UJT2 592 aa20.78■□□□□ 0.92
VIM-203ENST00000469543 SYNPO2Q9UMS6 1093 aa20.78■□□□□ 0.92
VIM-203ENST00000469543 NR2E1Q9Y466 385 aa20.78■□□□□ 0.92
VIM-203ENST00000469543 PPP1R12BO60237 982 aaPredicted RBP20.77■□□□□ 0.92
VIM-203ENST00000469543 COPB2P35606 906 aa20.77■□□□□ 0.92
VIM-203ENST00000469543 NAA35Q5VZE5 725 aa20.77■□□□□ 0.92
VIM-203ENST00000469543 SAMD7Q7Z3H4 446 aa20.77■□□□□ 0.92
VIM-203ENST00000469543 PRPF38AQ8NAV1 312 aaKnown RBP20.77■□□□□ 0.92
VIM-203ENST00000469543 SLC35G2Q8TBE7 412 aa20.77■□□□□ 0.92
VIM-203ENST00000469543 AFAP1L1Q8TED9 768 aa20.77■□□□□ 0.92
VIM-203ENST00000469543 SLC20A1Q8WUM9 679 aa20.77■□□□□ 0.92
VIM-203ENST00000469543 PSMD1Q99460 953 aa20.77■□□□□ 0.92
VIM-203ENST00000469543 INTS2Q9H0H0 1204 aaKnown RBP20.77■□□□□ 0.92
VIM-203ENST00000469543 MYOZ2Q9NPC6 264 aa20.77■□□□□ 0.92
VIM-203ENST00000469543 PPP1R9AQ9ULJ8 1098 aa20.77■□□□□ 0.92
VIM-203ENST00000469543 NENFQ9UMX5 172 aa20.77■□□□□ 0.92
VIM-203ENST00000469543 RIPK3Q9Y572 518 aa20.77■□□□□ 0.92
VIM-203ENST00000469543 RARRES1P49788 294 aa20.77■□□□□ 0.92
VIM-203ENST00000469543 BFSP1Q12934 665 aa20.77■□□□□ 0.92
VIM-203ENST00000469543 MTMR1Q13613 665 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 120.2 ms