RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 NDST4Q9H3R1 872 aa20.86■□□□□ 0.93
SMC4-209ENST00000468653 TMEM206Q9H813 350 aa20.86■□□□□ 0.93
SMC4-209ENST00000468653 NKRFO15226 690 aaKnown RBP eCLIP20.85■□□□□ 0.93
SMC4-209ENST00000468653 TOMM70O94826 608 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 ADCYAP1R1P41586 468 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 TM4SF4P48230 202 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 NCKAP1LP55160 1127 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 ADKP55263 362 aaKnown RBP20.85■□□□□ 0.93
SMC4-209ENST00000468653 MARSP56192 900 aaKnown RBP20.85■□□□□ 0.93
SMC4-209ENST00000468653 SOX10P56693 466 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 RBL2Q08999 1139 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 CRHR2Q13324 411 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 TRIM14Q14142 442 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 EMC2Q15006 297 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 PLPPR4Q7Z2D5 763 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 KATNBL1Q9H079 304 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 ST6GALNAC4Q9H4F1 302 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 XPNPEP1Q9NQW7 623 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 MARK3P27448 753 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 RFC5P40937 340 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 NPTX2P47972 431 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 ARHGAP1Q07960 439 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 CEP135Q66GS9 1140 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 MSL3Q8N5Y2 521 aaKnown RBP20.85■□□□□ 0.93
SMC4-209ENST00000468653 CCDC112Q8NEF3 446 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 SLC7A3Q8WY07 619 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 IFT74Q96LB3 600 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 ZIC5Q96T25 663 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 POLR3FQ9H1D9 316 aaPredicted RBP20.85■□□□□ 0.93
SMC4-209ENST00000468653 IKZF4Q9H2S9 585 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 ABHD16BQ9H3Z7 469 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 SMARCAD1Q9H4L7 1026 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 KMT5AQ9NQR1 393 aa20.85■□□□□ 0.93
SMC4-209ENST00000468653 ARID2Q68CP9 1835 aa20.84■□□□□ 0.93
SMC4-209ENST00000468653 EMSYQ7Z589 1322 aa20.84■□□□□ 0.93
SMC4-209ENST00000468653 RTP1P59025 263 aa20.84■□□□□ 0.93
SMC4-209ENST00000468653 GTF2BQ00403 316 aa20.84■□□□□ 0.93
SMC4-209ENST00000468653 ACVR2BQ13705 512 aa20.84■□□□□ 0.93
SMC4-209ENST00000468653 NFIL3Q16649 462 aa20.84■□□□□ 0.93
SMC4-209ENST00000468653 GJC2Q5T442 439 aaPredicted RBP20.84■□□□□ 0.93
SMC4-209ENST00000468653 CYP4F22Q6NT55 531 aa20.84■□□□□ 0.93
SMC4-209ENST00000468653 TRIM50Q86XT4 487 aa20.84■□□□□ 0.93
SMC4-209ENST00000468653 TC2NQ8N9U0 490 aa20.84■□□□□ 0.93
SMC4-209ENST00000468653 SPIRE2Q8WWL2 714 aa20.84■□□□□ 0.93
SMC4-209ENST00000468653 BBXQ8WY36 941 aaPredicted RBP20.84■□□□□ 0.93
SMC4-209ENST00000468653 PCMTD1Q96MG8 357 aaPredicted RBP20.84■□□□□ 0.93
SMC4-209ENST00000468653 DHX33Q9H6R0 707 aaKnown RBP20.84■□□□□ 0.93
SMC4-209ENST00000468653 AGPAT3Q9NRZ7 376 aa20.84■□□□□ 0.93
SMC4-209ENST00000468653 ZHX1Q9UKY1 873 aaPredicted RBP20.84■□□□□ 0.93
SMC4-209ENST00000468653 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.84■□□□□ 0.931e-8■■■■■ 54.3
SMC4-209ENST00000468653 ZNF236Q9UL36 1845 aa20.83■□□□□ 0.93
SMC4-209ENST00000468653 GYPCP04921 128 aa20.83■□□□□ 0.93
SMC4-209ENST00000468653 EPB41P11171 864 aaKnown RBP20.83■□□□□ 0.93
SMC4-209ENST00000468653 SYCP1Q15431 976 aa20.83■□□□□ 0.93
SMC4-209ENST00000468653 TARBP2Q15633 366 aaKnown RBP20.83■□□□□ 0.93
SMC4-209ENST00000468653 FRMD5Q7Z6J6 570 aa20.83■□□□□ 0.93
SMC4-209ENST00000468653 TRIM59Q8IWR1 403 aa20.83■□□□□ 0.93
SMC4-209ENST00000468653 BSNDQ8WZ55 320 aa20.83■□□□□ 0.93
SMC4-209ENST00000468653 ARMCX3Q9UH62 379 aaPredicted RBP20.83■□□□□ 0.93
SMC4-209ENST00000468653 PPME1Q9Y570 386 aa20.83■□□□□ 0.93
SMC4-209ENST00000468653 SLC16A3O15427 465 aaKnown RBP20.82■□□□□ 0.92
SMC4-209ENST00000468653 CA12O43570 354 aa20.82■□□□□ 0.92
SMC4-209ENST00000468653 CASP14P31944 242 aa20.82■□□□□ 0.92
SMC4-209ENST00000468653 SLC26A2P50443 739 aa20.82■□□□□ 0.92
SMC4-209ENST00000468653 CNGA4Q8IV77 575 aa20.82■□□□□ 0.92
SMC4-209ENST00000468653 C17orf53Q8N3J3 647 aaPredicted RBP20.82■□□□□ 0.92
SMC4-209ENST00000468653 TMEM161BQ8NDZ6 487 aa20.82■□□□□ 0.92
SMC4-209ENST00000468653 ATP8B4Q8TF62 1192 aa20.82■□□□□ 0.92
SMC4-209ENST00000468653 TMEM143Q96AN5 459 aa20.82■□□□□ 0.92
SMC4-209ENST00000468653 ERGIC2Q96RQ1 377 aa20.82■□□□□ 0.92
SMC4-209ENST00000468653 NTPCRQ9BSD7 190 aaKnown RBP20.82■□□□□ 0.92
SMC4-209ENST00000468653 METTL14Q9HCE5 456 aaKnown RBP20.82■□□□□ 0.92
SMC4-209ENST00000468653 KCNG1Q9UIX4 513 aa20.82■□□□□ 0.92
SMC4-209ENST00000468653 FAM184BQ9ULE4 1060 aa20.82■□□□□ 0.92
SMC4-209ENST00000468653 EXOC7Q9UPT5 735 aa20.82■□□□□ 0.92
SMC4-209ENST00000468653 AKAP3O75969 853 aa20.82■□□□□ 0.92
SMC4-209ENST00000468653 IQSEC1Q6DN90 963 aa20.82■□□□□ 0.92
SMC4-209ENST00000468653 PPTC7Q8NI37 304 aa20.82■□□□□ 0.92
SMC4-209ENST00000468653 HVCN1Q96D96 273 aa20.82■□□□□ 0.92
SMC4-209ENST00000468653 CEP89Q96ST8 783 aa20.82■□□□□ 0.92
SMC4-209ENST00000468653 KIFC3Q9BVG8 833 aa20.82■□□□□ 0.92
SMC4-209ENST00000468653 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.81■□□□□ 0.92
SMC4-209ENST00000468653 TNPO2O14787 897 aaKnown RBP20.81■□□□□ 0.92
SMC4-209ENST00000468653 MFAP3LO75121 409 aa20.81■□□□□ 0.92
SMC4-209ENST00000468653 HOXC6P09630 235 aa20.81■□□□□ 0.92
SMC4-209ENST00000468653 FXR1P51114 621 aaKnown RBP eCLIP20.81■□□□□ 0.92
SMC4-209ENST00000468653 CYP2J2P51589 502 aa20.81■□□□□ 0.92
SMC4-209ENST00000468653 PLCB4Q15147 1175 aa20.81■□□□□ 0.92
SMC4-209ENST00000468653 EMID1Q96A84 441 aaPredicted RBP20.81■□□□□ 0.92
SMC4-209ENST00000468653 PANX2Q96RD6 677 aa20.81■□□□□ 0.92
SMC4-209ENST00000468653 NUP58Q9BVL2 599 aa20.81■□□□□ 0.92
SMC4-209ENST00000468653 TMX1Q9H3N1 280 aa20.81■□□□□ 0.92
SMC4-209ENST00000468653 CGNQ9P2M7 1197 aaKnown RBP20.81■□□□□ 0.92
SMC4-209ENST00000468653 TBX20Q9UMR3 447 aa20.81■□□□□ 0.92
SMC4-209ENST00000468653 FRMD4BQ9Y2L6 1034 aa20.81■□□□□ 0.92
SMC4-209ENST00000468653 DENND3A2RUS2 1198 aa20.8■□□□□ 0.92
SMC4-209ENST00000468653 H0YCG3 227 aa20.8■□□□□ 0.92
SMC4-209ENST00000468653 PSMC2P35998 433 aaKnown RBP20.8■□□□□ 0.92
SMC4-209ENST00000468653 RGS2P41220 211 aa20.8■□□□□ 0.92
SMC4-209ENST00000468653 CASP4P49662 377 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms