RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 C1orf162Q8NEQ5 155 aaPredicted RBP5.6□□□□□ -1.51
VPS41-210ENST00000462429 OR5AN1Q8NGI8 311 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 TGFBRAP1Q8WUH2 860 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 CHMP4CQ96CF2 233 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 EAF2Q96CJ1 260 aaPredicted RBP5.6□□□□□ -1.51
VPS41-210ENST00000462429 FUBP3Q96I24 572 aaKnown RBP eCLIP5.6□□□□□ -1.51
VPS41-210ENST00000462429 HIST1H2AHQ96KK5 128 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 HIST1H2AJQ99878 128 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 NOL10Q9BSC4 688 aaKnown RBP5.6□□□□□ -1.51
VPS41-210ENST00000462429 CCM2LQ9NUG4 571 aaPredicted RBP5.6□□□□□ -1.51
VPS41-210ENST00000462429 SAE1Q9UBE0 346 aaPredicted RBP5.6□□□□□ -1.51
VPS41-210ENST00000462429 PCDHB6Q9Y5E3 794 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 MRFAP1Q9Y605 127 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 A0A0A6YYJ9 748 aa5.59□□□□□ -1.51
VPS41-210ENST00000462429 TRIM75PA6NK02 468 aa5.59□□□□□ -1.51
VPS41-210ENST00000462429 KLHL18O94889 574 aa5.59□□□□□ -1.51
VPS41-210ENST00000462429 C8AP07357 584 aa5.59□□□□□ -1.51
VPS41-210ENST00000462429 CCND1P24385 295 aa5.59□□□□□ -1.51
VPS41-210ENST00000462429 GPR15P49685 360 aa5.59□□□□□ -1.51
VPS41-210ENST00000462429 EPHB1P54762 984 aa5.59□□□□□ -1.51
VPS41-210ENST00000462429 MRPS9P82933 396 aaKnown RBP5.59□□□□□ -1.51
VPS41-210ENST00000462429 TOP3AQ13472 1001 aaPredicted RBP5.59□□□□□ -1.51
VPS41-210ENST00000462429 SPIDRQ14159 915 aa5.59□□□□□ -1.51
VPS41-210ENST00000462429 CCDC178Q5BJE1 867 aa5.59□□□□□ -1.51
VPS41-210ENST00000462429 PITRM1Q5JRX3 1037 aa5.59□□□□□ -1.51
VPS41-210ENST00000462429 FAM26FQ5R3K3 315 aa5.59□□□□□ -1.51
VPS41-210ENST00000462429 REXO1L1PQ8IX06 675 aa5.59□□□□□ -1.51
VPS41-210ENST00000462429 OR14C36Q8NHC7 312 aa5.59□□□□□ -1.51
VPS41-210ENST00000462429 FAXDC2Q96IV6 333 aa5.59□□□□□ -1.51
VPS41-210ENST00000462429 YTHDC1Q96MU7 727 aaKnown RBP5.59□□□□□ -1.51
VPS41-210ENST00000462429 TOX2Q96NM4 488 aa5.59□□□□□ -1.51
VPS41-210ENST00000462429 KCTD10Q9H3F6 313 aa5.59□□□□□ -1.51
VPS41-210ENST00000462429 BARX1Q9HBU1 254 aaPredicted RBP5.59□□□□□ -1.51
VPS41-210ENST00000462429 DNAJC28Q9NX36 388 aa5.59□□□□□ -1.51
VPS41-210ENST00000462429 USP18Q9UMW8 372 aa5.59□□□□□ -1.51
VPS41-210ENST00000462429 TNKSO95271 1327 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 C9orf118A6NHY6 69 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 NRP2O60462 931 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 H2AFYO75367 372 aaKnown RBP5.58□□□□□ -1.52
VPS41-210ENST00000462429 HMGCRP04035 888 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 LPLP06858 475 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 RBP3P10745 1247 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 XPAP23025 273 aaPredicted RBP5.58□□□□□ -1.52
VPS41-210ENST00000462429 ETV4P43268 484 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 KCNQ1P51787 676 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 KRT85P78386 507 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 PPARAQ07869 468 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 EIF4HQ15056 248 aaKnown RBP5.58□□□□□ -1.52
VPS41-210ENST00000462429 TTF1Q15361 905 aaPredicted RBP5.58□□□□□ -1.52
VPS41-210ENST00000462429 CLUL1Q15846 466 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 MCTP2Q6DN12 878 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 Q6ZUG5 572 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 PNMA8AQ86V59 439 aaPredicted RBP5.58□□□□□ -1.52
VPS41-210ENST00000462429 ADGRG2Q8IZP9 1017 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 NUDT10Q8NFP7 164 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 ADAMTS17Q8TE56 1095 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 GAB3Q8WWW8 586 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 AUTS2Q8WXX7 1259 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 SSH1Q8WYL5 1049 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 NUDT11Q96G61 164 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 DYDC2Q96IM9 177 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 SPATA25Q9BR10 227 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 SLC13A1Q9BZW2 595 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 QRSL1Q9H0R6 528 aaKnown RBP5.58□□□□□ -1.52
VPS41-210ENST00000462429 POLR3BQ9NW08 1133 aaPredicted RBP5.58□□□□□ -1.52
VPS41-210ENST00000462429 PRSS50Q9UI38 385 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 CDC42EP3Q9UKI2 254 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 TMPRSS11EQ9UL52 423 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 EDARQ9UNE0 448 aa5.58□□□□□ -1.52
VPS41-210ENST00000462429 A0A1B0GTL3 188 aa5.57□□□□□ -1.52
VPS41-210ENST00000462429 SLC5A3P53794 718 aa5.57□□□□□ -1.52
VPS41-210ENST00000462429 LGALS4P56470 323 aa5.57□□□□□ -1.52
VPS41-210ENST00000462429 NRG3P56975 720 aa5.57□□□□□ -1.52
VPS41-210ENST00000462429 SESN2P58004 480 aaPredicted RBP5.57□□□□□ -1.52
VPS41-210ENST00000462429 SRSF2Q01130 221 aaKnown RBP5.57□□□□□ -1.52
VPS41-210ENST00000462429 MAN2A1Q16706 1144 aa5.57□□□□□ -1.52
VPS41-210ENST00000462429 TOR2AQ5JU69 321 aa5.57□□□□□ -1.52
VPS41-210ENST00000462429 RTKN2Q8IZC4 609 aa5.57□□□□□ -1.52
VPS41-210ENST00000462429 KLHL36Q8N4N3 616 aa5.57□□□□□ -1.52
VPS41-210ENST00000462429 TXNDC5Q8NBS9 432 aaKnown RBP5.57□□□□□ -1.52
VPS41-210ENST00000462429 ZSCAN18Q8TBC5 510 aaPredicted RBP5.57□□□□□ -1.52
VPS41-210ENST00000462429 JDP2Q8WYK2 163 aa5.57□□□□□ -1.52
VPS41-210ENST00000462429 AJUBAQ96IF1 538 aa5.57□□□□□ -1.52
VPS41-210ENST00000462429 CARD11Q9BXL7 1154 aa5.57□□□□□ -1.52
VPS41-210ENST00000462429 HAPLN2Q9GZV7 340 aa5.57□□□□□ -1.52
VPS41-210ENST00000462429 AASDHPPTQ9NRN7 309 aa5.57□□□□□ -1.52
VPS41-210ENST00000462429 KLHL42Q9P2K6 505 aa5.57□□□□□ -1.52
VPS41-210ENST00000462429 GPR45Q9Y5Y3 372 aa5.57□□□□□ -1.52
VPS41-210ENST00000462429 E2F8A0AVK6 867 aa5.56□□□□□ -1.52
VPS41-210ENST00000462429 KLHL33A6NCF5 533 aa5.56□□□□□ -1.52
VPS41-210ENST00000462429 XPOTO43592 962 aaKnown RBP5.56□□□□□ -1.52
VPS41-210ENST00000462429 SNUPNO95149 360 aaKnown RBP5.56□□□□□ -1.52
VPS41-210ENST00000462429 MEOX1P50221 254 aa5.56□□□□□ -1.52
VPS41-210ENST00000462429 TRIM25Q14258 630 aaKnown RBP5.56□□□□□ -1.52
VPS41-210ENST00000462429 ACAP2Q15057 778 aa5.56□□□□□ -1.52
VPS41-210ENST00000462429 PCBP2Q15366 365 aaKnown RBP eCLIP5.56□□□□□ -1.52
VPS41-210ENST00000462429 VMACQ2NL98 169 aa5.56□□□□□ -1.52
VPS41-210ENST00000462429 MUM1Q2TAK8 710 aa5.56□□□□□ -1.52
VPS41-210ENST00000462429 FAM124AQ86V42 546 aa5.56□□□□□ -1.52
VPS41-210ENST00000462429 LYSMD2Q8IV50 215 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms