RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 CEP85Q6P2H3 762 aa8.82□□□□□ -1
USP54-208ENST00000461520 RAET1EQ8TD07 263 aa8.82□□□□□ -1
USP54-208ENST00000461520 SH3RF3Q8TEJ3 882 aaPredicted RBP8.82□□□□□ -1
USP54-208ENST00000461520 FAM84AQ96KN4 292 aa8.82□□□□□ -1
USP54-208ENST00000461520 SLC38A3Q99624 504 aa8.82□□□□□ -1
USP54-208ENST00000461520 AATFQ9NY61 560 aaKnown RBP eCLIP8.82□□□□□ -1
USP54-208ENST00000461520 ADAMTS1Q9UHI8 967 aa8.82□□□□□ -1
USP54-208ENST00000461520 DBNLQ9UJU6 430 aaKnown RBP8.82□□□□□ -1
USP54-208ENST00000461520 AGTPBP1Q9UPW5 1226 aa8.82□□□□□ -1
USP54-208ENST00000461520 MYPNQ86TC9 1320 aa8.81□□□□□ -1
USP54-208ENST00000461520 DOCK1Q14185 1865 aa8.81□□□□□ -1
USP54-208ENST00000461520 SHISA3A0PJX4 238 aa8.81□□□□□ -1
USP54-208ENST00000461520 TRHRP34981 398 aaPredicted RBP8.81□□□□□ -1
USP54-208ENST00000461520 PABPC4Q13310 644 aaKnown RBP eCLIP8.81□□□□□ -1
USP54-208ENST00000461520 PKN1Q16512 942 aa8.81□□□□□ -1
USP54-208ENST00000461520 HSP90AB4PQ58FF6 505 aa8.81□□□□□ -1
USP54-208ENST00000461520 TMED8Q6PL24 325 aaPredicted RBP8.81□□□□□ -1
USP54-208ENST00000461520 METTL16Q86W50 562 aaKnown RBP8.81□□□□□ -1
USP54-208ENST00000461520 CERS3Q8IU89 383 aa8.81□□□□□ -1
USP54-208ENST00000461520 ERC1Q8IUD2 1116 aa8.81□□□□□ -1
USP54-208ENST00000461520 FOXP4Q8IVH2 680 aaPredicted RBP8.81□□□□□ -1
USP54-208ENST00000461520 ABHD4Q8TB40 342 aa8.81□□□□□ -1
USP54-208ENST00000461520 SMCR8Q8TEV9 937 aaPredicted RBP8.81□□□□□ -1
USP54-208ENST00000461520 EAF2Q96CJ1 260 aaPredicted RBP8.81□□□□□ -1
USP54-208ENST00000461520 LRRC3Q9BY71 257 aa8.81□□□□□ -1
USP54-208ENST00000461520 CCDC8Q9H0W5 538 aaPredicted RBP8.81□□□□□ -1
USP54-208ENST00000461520 AS3MTQ9HBK9 375 aa8.81□□□□□ -1
USP54-208ENST00000461520 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.81□□□□□ -1
USP54-208ENST00000461520 PCDHA11Q9Y5I1 949 aa8.81□□□□□ -1
USP54-208ENST00000461520 FLT1P17948 1338 aa8.8□□□□□ -1
USP54-208ENST00000461520 ASNSP08243 561 aa8.8□□□□□ -1
USP54-208ENST00000461520 RAC2P15153 192 aa8.8□□□□□ -1
USP54-208ENST00000461520 UBXN2AP68543 259 aa8.8□□□□□ -1
USP54-208ENST00000461520 PRKCZQ05513 592 aa8.8□□□□□ -1
USP54-208ENST00000461520 SPP2Q13103 211 aa8.8□□□□□ -1
USP54-208ENST00000461520 FAM110CQ1W6H9 321 aa8.8□□□□□ -1
USP54-208ENST00000461520 TREML2Q5T2D2 321 aa8.8□□□□□ -1
USP54-208ENST00000461520 HS2ST1Q7LGA3 356 aa8.8□□□□□ -1
USP54-208ENST00000461520 ADGRA1Q86SQ6 560 aa8.8□□□□□ -1
USP54-208ENST00000461520 MAPKAPK5Q8IW41 473 aa8.8□□□□□ -1
USP54-208ENST00000461520 PANK1Q8TE04 598 aa8.8□□□□□ -1
USP54-208ENST00000461520 TGFBRAP1Q8WUH2 860 aa8.8□□□□□ -1
USP54-208ENST00000461520 MYLIPQ8WY64 445 aa8.8□□□□□ -1
USP54-208ENST00000461520 VWCEQ96DN2 955 aa8.8□□□□□ -1
USP54-208ENST00000461520 ASPNQ9BXN1 380 aa8.8□□□□□ -1
USP54-208ENST00000461520 KCNK12Q9HB15 430 aa8.8□□□□□ -1
USP54-208ENST00000461520 PIH1D3Q9NQM4 214 aaKnown RBP8.8□□□□□ -1
USP54-208ENST00000461520 GINM1Q9NU53 330 aa8.8□□□□□ -1
USP54-208ENST00000461520 UBP1Q9NZI7 540 aa8.8□□□□□ -1
USP54-208ENST00000461520 MAST2Q6P0Q8 1798 aa8.8□□□□□ -1
USP54-208ENST00000461520 MGAMO43451 1857 aa8.79□□□□□ -1
USP54-208ENST00000461520 TNPO2O14787 897 aaKnown RBP8.79□□□□□ -1
USP54-208ENST00000461520 RGS13O14921 159 aa8.79□□□□□ -1
USP54-208ENST00000461520 IDH1O75874 414 aaKnown RBP8.79□□□□□ -1
USP54-208ENST00000461520 UBOX5O94941 541 aa8.79□□□□□ -1
USP54-208ENST00000461520 HLA-DOAP06340 250 aa8.79□□□□□ -1
USP54-208ENST00000461520 GCLCP48506 637 aaPredicted RBP8.79□□□□□ -1
USP54-208ENST00000461520 HMGCS2P54868 508 aa8.79□□□□□ -1
USP54-208ENST00000461520 RRP1BQ14684 758 aaKnown RBP8.79□□□□□ -1
USP54-208ENST00000461520 SEZ6Q53EL9 994 aa8.79□□□□□ -1
USP54-208ENST00000461520 RPAP2Q8IXW5 612 aaPredicted RBP8.79□□□□□ -1
USP54-208ENST00000461520 CRACR2BQ8N4Y2 399 aaPredicted RBP8.79□□□□□ -1
USP54-208ENST00000461520 ANKRD13CQ8N6S4 541 aa8.79□□□□□ -1
USP54-208ENST00000461520 DPF3Q92784 378 aa8.79□□□□□ -1
USP54-208ENST00000461520 SHISA4Q96DD7 197 aa8.79□□□□□ -1
USP54-208ENST00000461520 DIRC2Q96SL1 478 aa8.79□□□□□ -1
USP54-208ENST00000461520 DNAJC18Q9H819 358 aa8.79□□□□□ -1
USP54-208ENST00000461520 GABRQQ9UN88 632 aa8.79□□□□□ -1
USP54-208ENST00000461520 EXOC6BQ9Y2D4 811 aa8.79□□□□□ -1
USP54-208ENST00000461520 PHIPQ8WWQ0 1821 aa8.79□□□□□ -1
USP54-208ENST00000461520 RANBP2P49792 3224 aaKnown RBP8.78□□□□□ -1
USP54-208ENST00000461520 C19orf81C9J6K1 198 aa8.78□□□□□ -1
USP54-208ENST00000461520 ATE1O95260 518 aa8.78□□□□□ -1
USP54-208ENST00000461520 HPXP02790 462 aa8.78□□□□□ -1
USP54-208ENST00000461520 GJB1P08034 283 aa8.78□□□□□ -1
USP54-208ENST00000461520 RAG1P15918 1043 aa8.78□□□□□ -1
USP54-208ENST00000461520 CAPN2P17655 700 aa8.78□□□□□ -1
USP54-208ENST00000461520 POLR2BP30876 1174 aaKnown RBP8.78□□□□□ -1
USP54-208ENST00000461520 HOXA7P31268 230 aaPredicted RBP8.78□□□□□ -1
USP54-208ENST00000461520 GJA8P48165 433 aa8.78□□□□□ -1
USP54-208ENST00000461520 FLT3LGP49771 235 aa8.78□□□□□ -1
USP54-208ENST00000461520 BACE1P56817 501 aa8.78□□□□□ -1
USP54-208ENST00000461520 CHMP4BP1P59074 171 aa8.78□□□□□ -1
USP54-208ENST00000461520 DYNLL1P63167 89 aaKnown RBP8.78□□□□□ -1
USP54-208ENST00000461520 MAP3K12Q12852 859 aa8.78□□□□□ -1
USP54-208ENST00000461520 TTF1Q15361 905 aaPredicted RBP8.78□□□□□ -1
USP54-208ENST00000461520 AACSQ86V21 672 aa8.78□□□□□ -1
USP54-208ENST00000461520 COA7Q96BR5 231 aa8.78□□□□□ -1
USP54-208ENST00000461520 CHMP4BQ9H444 224 aaKnown RBP8.78□□□□□ -1
USP54-208ENST00000461520 PALD1Q9ULE6 856 aa8.78□□□□□ -1
USP54-208ENST00000461520 DDX19BQ9UMR2 479 aa8.78□□□□□ -1
USP54-208ENST00000461520 PTPRFP10586 1907 aa8.78□□□□□ -1
USP54-208ENST00000461520 LOC285556D6RIA3 1793 aa8.77□□□□□ -1.01
USP54-208ENST00000461520 RBM47A0AV96 593 aaKnown RBP8.77□□□□□ -1.01
USP54-208ENST00000461520 DBX1A6NMT0 343 aa8.77□□□□□ -1.01
USP54-208ENST00000461520 ADCY3O60266 1144 aa8.77□□□□□ -1.01
USP54-208ENST00000461520 HMMRO75330 724 aa8.77□□□□□ -1.01
USP54-208ENST00000461520 ZGLP1P0C6A0 271 aa8.77□□□□□ -1.01
USP54-208ENST00000461520 CCL5P13501 91 aa8.77□□□□□ -1.01
USP54-208ENST00000461520 CLCQ05315 142 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms