RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 CRYBB1P53674 252 aaPredicted RBP20.74■□□□□ 0.91
HOXD3-204ENST00000459979 TBC1D8BQ0IIM8 1120 aa20.74■□□□□ 0.91
HOXD3-204ENST00000459979 FIBCD1Q8N539 461 aa20.74■□□□□ 0.91
HOXD3-204ENST00000459979 HSD17B14Q9BPX1 270 aa20.74■□□□□ 0.91
HOXD3-204ENST00000459979 NSUN3Q9H649 340 aaKnown RBP20.74■□□□□ 0.91
HOXD3-204ENST00000459979 TTC12Q9H892 705 aaPredicted RBP20.74■□□□□ 0.91
HOXD3-204ENST00000459979 SEPT9Q9UHD8 586 aaPredicted RBP20.74■□□□□ 0.91
HOXD3-204ENST00000459979 DDX11L8A8MPP1 907 aa20.73■□□□□ 0.91
HOXD3-204ENST00000459979 MAFO75444 373 aaPredicted RBP20.73■□□□□ 0.91
HOXD3-204ENST00000459979 LINC00271P0C7V0 271 aa20.73■□□□□ 0.91
HOXD3-204ENST00000459979 CDC42EP1Q00587 391 aa20.73■□□□□ 0.91
HOXD3-204ENST00000459979 ODR4Q5SWX8 454 aa20.73■□□□□ 0.91
HOXD3-204ENST00000459979 MAP7D2Q96T17 732 aa20.73■□□□□ 0.91
HOXD3-204ENST00000459979 TMEM60Q9H2L4 133 aa20.73■□□□□ 0.91
HOXD3-204ENST00000459979 ZSWIM4Q9H7M6 989 aa20.73■□□□□ 0.91
HOXD3-204ENST00000459979 CDHR5Q9HBB8 845 aa20.73■□□□□ 0.91
HOXD3-204ENST00000459979 CLDND1Q9NY35 253 aa20.73■□□□□ 0.91
HOXD3-204ENST00000459979 WRAP73Q9P2S5 460 aaPredicted RBP20.73■□□□□ 0.91
HOXD3-204ENST00000459979 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.73■□□□□ 0.91
HOXD3-204ENST00000459979 GRM6O15303 877 aa20.72■□□□□ 0.91
HOXD3-204ENST00000459979 SLITRK3O94933 977 aa20.72■□□□□ 0.91
HOXD3-204ENST00000459979 LYPLA2O95372 231 aa20.72■□□□□ 0.91
HOXD3-204ENST00000459979 MCM7P33993 719 aa20.72■□□□□ 0.91
HOXD3-204ENST00000459979 TXKP42681 527 aa20.72■□□□□ 0.91
HOXD3-204ENST00000459979 CLCN3P51790 818 aa20.72■□□□□ 0.91
HOXD3-204ENST00000459979 PAK2Q13177 524 aa20.72■□□□□ 0.91
HOXD3-204ENST00000459979 CUL4AQ13619 759 aa20.72■□□□□ 0.91
HOXD3-204ENST00000459979 GNL2Q13823 731 aaKnown RBP20.72■□□□□ 0.91
HOXD3-204ENST00000459979 MTERF2Q49AM1 385 aa20.72■□□□□ 0.91
HOXD3-204ENST00000459979 NCAPH2Q6IBW4 605 aa20.72■□□□□ 0.91
HOXD3-204ENST00000459979 EXOC8Q8IYI6 725 aa20.72■□□□□ 0.91
HOXD3-204ENST00000459979 TMEM40Q8WWA1 233 aa20.72■□□□□ 0.91
HOXD3-204ENST00000459979 PABPC5Q96DU9 382 aaKnown RBP20.72■□□□□ 0.91
HOXD3-204ENST00000459979 JPH2Q9BR39 696 aaPredicted RBP20.72■□□□□ 0.91
HOXD3-204ENST00000459979 LXNQ9BS40 222 aa20.72■□□□□ 0.91
HOXD3-204ENST00000459979 ADAMTS10Q9H324 1103 aa20.72■□□□□ 0.91
HOXD3-204ENST00000459979 ERVK-5Q9HDB9 667 aa20.72■□□□□ 0.91
HOXD3-204ENST00000459979 CYP26B1Q9NR63 512 aa20.72■□□□□ 0.91
HOXD3-204ENST00000459979 RGL1Q9NZL6 768 aa20.72■□□□□ 0.91
HOXD3-204ENST00000459979 NOC2LQ9Y3T9 749 aaKnown RBP20.72■□□□□ 0.91
HOXD3-204ENST00000459979 ADGRA3Q8IWK6 1321 aa20.72■□□□□ 0.91
HOXD3-204ENST00000459979 TMEM150BA6NC51 233 aa20.71■□□□□ 0.91
HOXD3-204ENST00000459979 RPS6KA5O75582 802 aa20.71■□□□□ 0.91
HOXD3-204ENST00000459979 VTNP04004 478 aa20.71■□□□□ 0.91
HOXD3-204ENST00000459979 ATP2B1P20020 1258 aa20.71■□□□□ 0.91
HOXD3-204ENST00000459979 GJB2P29033 226 aa20.71■□□□□ 0.91
HOXD3-204ENST00000459979 KIZQ2M2Z5 673 aa20.71■□□□□ 0.91
HOXD3-204ENST00000459979 TTC38Q5R3I4 469 aa20.71■□□□□ 0.91
HOXD3-204ENST00000459979 RTN4RL1Q86UN2 441 aaPredicted RBP20.71■□□□□ 0.91
HOXD3-204ENST00000459979 CRIPAKQ8N1N5 446 aa20.71■□□□□ 0.91
HOXD3-204ENST00000459979 LRRC71Q8N4P6 559 aa20.71■□□□□ 0.91
HOXD3-204ENST00000459979 LINC01599Q8WXQ3 324 aa20.71■□□□□ 0.91
HOXD3-204ENST00000459979 DYDC2Q96IM9 177 aa20.71■□□□□ 0.91
HOXD3-204ENST00000459979 EIF2AK1Q9BQI3 630 aaKnown RBP20.71■□□□□ 0.91
HOXD3-204ENST00000459979 TMX1Q9H3N1 280 aa20.71■□□□□ 0.91
HOXD3-204ENST00000459979 RC3H2Q9HBD1 1191 aaKnown RBP20.71■□□□□ 0.91
HOXD3-204ENST00000459979 NOL7Q9UMY1 257 aaKnown RBP20.71■□□□□ 0.91
HOXD3-204ENST00000459979 AKT3Q9Y243 479 aa20.71■□□□□ 0.91
HOXD3-204ENST00000459979 GPR182O15218 404 aa20.7■□□□□ 0.9
HOXD3-204ENST00000459979 BMPR1AP36894 532 aa20.7■□□□□ 0.9
HOXD3-204ENST00000459979 TOB1P50616 345 aaPredicted RBP20.7■□□□□ 0.9
HOXD3-204ENST00000459979 GPC3P51654 580 aa20.7■□□□□ 0.9
HOXD3-204ENST00000459979 NLRP11P59045 1033 aaKnown RBP20.7■□□□□ 0.9
HOXD3-204ENST00000459979 ZNF174Q15697 407 aa20.7■□□□□ 0.9
HOXD3-204ENST00000459979 CLUL1Q15846 466 aa20.7■□□□□ 0.9
HOXD3-204ENST00000459979 OTUD6AQ7L8S5 288 aa20.7■□□□□ 0.9
HOXD3-204ENST00000459979 C4orf32Q8N8J7 132 aa20.7■□□□□ 0.9
HOXD3-204ENST00000459979 OSMRQ99650 979 aa20.7■□□□□ 0.9
HOXD3-204ENST00000459979 ST3GAL5Q9UNP4 418 aa20.7■□□□□ 0.9
HOXD3-204ENST00000459979 SMC3Q9UQE7 1217 aa20.7■□□□□ 0.9
HOXD3-204ENST00000459979 GINS2Q9Y248 185 aa20.7■□□□□ 0.9
HOXD3-204ENST00000459979 C5orf67F2Z3F1 127 aa20.69■□□□□ 0.9
HOXD3-204ENST00000459979 OR52Z1P0C646 297 aa20.69■□□□□ 0.9
HOXD3-204ENST00000459979 EIF4BP23588 611 aaKnown RBP20.69■□□□□ 0.9
HOXD3-204ENST00000459979 YWHABP31946 246 aaKnown RBP20.69■□□□□ 0.9
HOXD3-204ENST00000459979 GTF2F1P35269 517 aaKnown RBP eCLIP20.69■□□□□ 0.9
HOXD3-204ENST00000459979 LTBRP36941 435 aa20.69■□□□□ 0.9
HOXD3-204ENST00000459979 DNM2P50570 870 aa20.69■□□□□ 0.9
HOXD3-204ENST00000459979 BTG3Q14201 252 aaPredicted RBP20.69■□□□□ 0.9
HOXD3-204ENST00000459979 CTTNQ14247 550 aaKnown RBP20.69■□□□□ 0.9
HOXD3-204ENST00000459979 COL19A1Q14993 1142 aa20.69■□□□□ 0.9
HOXD3-204ENST00000459979 PUS10Q3MIT2 529 aaKnown RBP20.69■□□□□ 0.9
HOXD3-204ENST00000459979 SH2D3AQ9BRG2 576 aa20.69■□□□□ 0.9
HOXD3-204ENST00000459979 DHX33Q9H6R0 707 aaKnown RBP20.69■□□□□ 0.9
HOXD3-204ENST00000459979 XRCC6P12956 609 aaKnown RBP eCLIP20.68■□□□□ 0.9
HOXD3-204ENST00000459979 HOXD11P31277 338 aaPredicted RBP20.68■□□□□ 0.9
HOXD3-204ENST00000459979 RFC5P40937 340 aa20.68■□□□□ 0.9
HOXD3-204ENST00000459979 NPEPPSP55786 919 aa20.68■□□□□ 0.9
HOXD3-204ENST00000459979 CYP4A11Q02928 519 aa20.68■□□□□ 0.9
HOXD3-204ENST00000459979 DLX2Q07687 328 aaPredicted RBP20.68■□□□□ 0.9
HOXD3-204ENST00000459979 HYAL1Q12794 435 aa20.68■□□□□ 0.9
HOXD3-204ENST00000459979 NFX1Q12986 1120 aaKnown RBP20.68■□□□□ 0.9
HOXD3-204ENST00000459979 DRP2Q13474 957 aa20.68■□□□□ 0.9
HOXD3-204ENST00000459979 TMEM266Q2M3C6 531 aa20.68■□□□□ 0.9
HOXD3-204ENST00000459979 PLA2G4FQ68DD2 849 aa20.68■□□□□ 0.9
HOXD3-204ENST00000459979 FAM228AQ86W67 206 aa20.68■□□□□ 0.9
HOXD3-204ENST00000459979 TPH2Q8IWU9 490 aa20.68■□□□□ 0.9
HOXD3-204ENST00000459979 ZNF689Q96CS4 500 aaPredicted RBP20.68■□□□□ 0.9
HOXD3-204ENST00000459979 CEP170P1Q96L14 293 aa20.68■□□□□ 0.9
HOXD3-204ENST00000459979 C11orf84Q9BUA3 381 aaPredicted RBP20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms