RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 C12orf56Q8IXR9 622 aa16.44■□□□□ 0.22
LDLR-202ENST00000455727 TAOK3Q9H2K8 898 aa16.44■□□□□ 0.22
LDLR-202ENST00000455727 PPP1R9AQ9ULJ8 1098 aa16.44■□□□□ 0.22
LDLR-202ENST00000455727 HPCAL4Q9UM19 191 aa16.44■□□□□ 0.22
LDLR-202ENST00000455727 PARP14Q460N5 1801 aa16.43■□□□□ 0.22
LDLR-202ENST00000455727 DDX39AO00148 427 aaKnown RBP16.43■□□□□ 0.22
LDLR-202ENST00000455727 RARRES1P49788 294 aa16.43■□□□□ 0.22
LDLR-202ENST00000455727 SYCP3Q8IZU3 236 aa16.43■□□□□ 0.22
LDLR-202ENST00000455727 CPXCR1Q8N123 301 aa16.43■□□□□ 0.22
LDLR-202ENST00000455727 ST6GALNAC4Q9H4F1 302 aa16.43■□□□□ 0.22
LDLR-202ENST00000455727 RAVER2Q9HCJ3 691 aaKnown RBP16.43■□□□□ 0.22
LDLR-202ENST00000455727 STIM2Q9P246 746 aa16.43■□□□□ 0.22
LDLR-202ENST00000455727 DMGDHQ9UI17 866 aaKnown RBP16.43■□□□□ 0.22
LDLR-202ENST00000455727 ZMYND10O75800 440 aa16.42■□□□□ 0.22
LDLR-202ENST00000455727 FTCDO95954 541 aa16.42■□□□□ 0.22
LDLR-202ENST00000455727 MYBL2P10244 700 aa16.42■□□□□ 0.22
LDLR-202ENST00000455727 RFX1P22670 979 aa16.42■□□□□ 0.22
LDLR-202ENST00000455727 SOX5P35711 763 aa16.42■□□□□ 0.22
LDLR-202ENST00000455727 CYP2J2P51589 502 aa16.42■□□□□ 0.22
LDLR-202ENST00000455727 SNRPFP62306 86 aaKnown RBP16.42■□□□□ 0.22
LDLR-202ENST00000455727 BFSP1Q12934 665 aa16.42■□□□□ 0.22
LDLR-202ENST00000455727 MUM1L1Q5H9M0 696 aa16.42■□□□□ 0.22
LDLR-202ENST00000455727 INPP4AQ96PE3 977 aaPredicted RBP16.42■□□□□ 0.22
LDLR-202ENST00000455727 SELENOOQ9BVL4 669 aa16.42■□□□□ 0.22
LDLR-202ENST00000455727 BRCA1P38398 1863 aaKnown RBP16.42■□□□□ 0.22
LDLR-202ENST00000455727 F8VZ95 297 aa16.42■□□□□ 0.22
LDLR-202ENST00000455727 H2AFZP0C0S5 128 aa16.42■□□□□ 0.22
LDLR-202ENST00000455727 CCDC172P0C7W6 258 aa16.42■□□□□ 0.22
LDLR-202ENST00000455727 TNNT3P45378 269 aaPredicted RBP16.42■□□□□ 0.22
LDLR-202ENST00000455727 NPEPPSP55786 919 aa16.42■□□□□ 0.22
LDLR-202ENST00000455727 PGM5Q15124 567 aa16.42■□□□□ 0.22
LDLR-202ENST00000455727 DALRD3Q5D0E6 543 aaKnown RBP16.42■□□□□ 0.22
LDLR-202ENST00000455727 GJB7Q6PEY0 223 aa16.42■□□□□ 0.22
LDLR-202ENST00000455727 H2AFVQ71UI9 128 aa16.42■□□□□ 0.22
LDLR-202ENST00000455727 LRRC57Q8N9N7 239 aa16.42■□□□□ 0.22
LDLR-202ENST00000455727 SLC30A5Q8TAD4 765 aa16.42■□□□□ 0.22
LDLR-202ENST00000455727 HDAC7Q8WUI4 952 aa16.42■□□□□ 0.22
LDLR-202ENST00000455727 LMBR1Q8WVP7 490 aa16.42■□□□□ 0.22
LDLR-202ENST00000455727 RBM12Q9NTZ6 932 aaKnown RBP16.42■□□□□ 0.22
LDLR-202ENST00000455727 ZC3H4Q9UPT8 1303 aaKnown RBP16.42■□□□□ 0.22
LDLR-202ENST00000455727 K7ENM7 598 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 DDX3XO00571 662 aaKnown RBP eCLIP16.41■□□□□ 0.228e-9■□□□□ 10
LDLR-202ENST00000455727 EXOC3O60645 756 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 N4BP1O75113 896 aaKnown RBP16.41■□□□□ 0.22
LDLR-202ENST00000455727 ZBED4O75132 1171 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 PLS3P13797 630 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 VCAM1P19320 739 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 RPS6P62753 249 aaKnown RBP16.41■□□□□ 0.22
LDLR-202ENST00000455727 CBWD6Q4V339 395 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 CBWD3Q5JTY5 395 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 CBWD5Q5RIA9 395 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 C8orf74Q6P047 294 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 C4orf19Q8IY42 314 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 CCDC102AQ96A19 550 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 MS4A14Q96JA4 679 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 ACCSQ96QU6 501 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 TAAR1Q96RJ0 339 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 EHD2Q9NZN4 543 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 APEX2Q9UBZ4 518 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 DNAJC12Q9UKB3 198 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 EVI5O60447 810 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 LMNB1P20700 586 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 MATR3P43243 847 aaKnown RBP eCLIP16.41■□□□□ 0.22
LDLR-202ENST00000455727 SF3B2Q13435 895 aaKnown RBP16.41■□□□□ 0.22
LDLR-202ENST00000455727 RPS6KA1Q15418 735 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 XRRA1Q6P2D8 792 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 INTS8Q75QN2 995 aaKnown RBP16.41■□□□□ 0.22
LDLR-202ENST00000455727 SLFN11Q7Z7L1 901 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 VTI1AQ96AJ9 217 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 PBKQ96KB5 322 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 SMARCAL1Q9NZC9 954 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 PKD2L1Q9P0L9 805 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 VPS18Q9P253 973 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 SAMM50Q9Y512 469 aa16.41■□□□□ 0.22
LDLR-202ENST00000455727 DOCK1Q14185 1865 aa16.4■□□□□ 0.22
LDLR-202ENST00000455727 A0A0U1RQG5 324 aaPredicted RBP16.4■□□□□ 0.22
LDLR-202ENST00000455727 MAPK13O15264 365 aa16.4■□□□□ 0.22
LDLR-202ENST00000455727 P4HA2O15460 535 aa16.4■□□□□ 0.22
LDLR-202ENST00000455727 SFNP31947 248 aa16.4■□□□□ 0.22
LDLR-202ENST00000455727 JAK3P52333 1124 aa16.4■□□□□ 0.22
LDLR-202ENST00000455727 MCCD1P59942 119 aaPredicted RBP16.4■□□□□ 0.22
LDLR-202ENST00000455727 GTF2BQ00403 316 aa16.4■□□□□ 0.22
LDLR-202ENST00000455727 MYL7Q01449 175 aa16.4■□□□□ 0.22
LDLR-202ENST00000455727 DRAP1Q14919 205 aaPredicted RBP16.4■□□□□ 0.22
LDLR-202ENST00000455727 EMBQ6PCB8 327 aa16.4■□□□□ 0.22
LDLR-202ENST00000455727 SLC17A8Q8NDX2 589 aa16.4■□□□□ 0.22
LDLR-202ENST00000455727 TAF4BQ92750 862 aa16.4■□□□□ 0.22
LDLR-202ENST00000455727 IWS1Q96ST2 819 aa16.4■□□□□ 0.22
LDLR-202ENST00000455727 SYT11Q9BT88 431 aa16.4■□□□□ 0.22
LDLR-202ENST00000455727 INTS2Q9H0H0 1204 aaKnown RBP16.4■□□□□ 0.22
LDLR-202ENST00000455727 CCDC66A2RUB6 948 aa16.4■□□□□ 0.22
LDLR-202ENST00000455727 KIF4AO95239 1232 aa16.4■□□□□ 0.22
LDLR-202ENST00000455727 SYF2O95926 243 aaKnown RBP16.4■□□□□ 0.22
LDLR-202ENST00000455727 KRT13P13646 458 aa16.4■□□□□ 0.22
LDLR-202ENST00000455727 YWHABP31946 246 aaKnown RBP16.4■□□□□ 0.22
LDLR-202ENST00000455727 TPCN2Q8NHX9 752 aa16.4■□□□□ 0.22
LDLR-202ENST00000455727 OLIG1Q8TAK6 271 aa16.4■□□□□ 0.22
LDLR-202ENST00000455727 LMO3Q8TAP4 145 aa16.4■□□□□ 0.22
LDLR-202ENST00000455727 PDCD2LQ9BRP1 358 aa16.4■□□□□ 0.22
LDLR-202ENST00000455727 GPR88Q9GZN0 384 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms