RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 CCDC83Q8IWF9 413 aa13.51□□□□□ -0.25
USP40-210ENST00000454354 P2RX5Q93086 422 aa13.51□□□□□ -0.25
USP40-210ENST00000454354 ZSCAN31Q96LW9 406 aaPredicted RBP13.51□□□□□ -0.25
USP40-210ENST00000454354 JPH2Q9BR39 696 aaPredicted RBP13.51□□□□□ -0.25
USP40-210ENST00000454354 LMAN2LQ9H0V9 348 aa13.51□□□□□ -0.25
USP40-210ENST00000454354 ELAC1Q9H777 363 aaKnown RBP13.51□□□□□ -0.25
USP40-210ENST00000454354 SH2B1Q9NRF2 756 aaPredicted RBP13.51□□□□□ -0.25
USP40-210ENST00000454354 TMEM161AQ9NX61 479 aa13.51□□□□□ -0.25
USP40-210ENST00000454354 WRAP73Q9P2S5 460 aaPredicted RBP13.51□□□□□ -0.25
USP40-210ENST00000454354 LRFN2Q9ULH4 789 aa13.51□□□□□ -0.25
USP40-210ENST00000454354 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.5□□□□□ -0.25
USP40-210ENST00000454354 DDX11L8A8MPP1 907 aa13.5□□□□□ -0.25
USP40-210ENST00000454354 WNT7AO00755 349 aa13.5□□□□□ -0.25
USP40-210ENST00000454354 BMP1P13497 986 aa13.5□□□□□ -0.25
USP40-210ENST00000454354 COL19A1Q14993 1142 aa13.5□□□□□ -0.25
USP40-210ENST00000454354 NAALADL2Q58DX5 795 aa13.5□□□□□ -0.25
USP40-210ENST00000454354 PLA2G4FQ68DD2 849 aa13.5□□□□□ -0.25
USP40-210ENST00000454354 C4orf19Q8IY42 314 aa13.5□□□□□ -0.25
USP40-210ENST00000454354 ADAMTS19Q8TE59 1207 aa13.5□□□□□ -0.25
USP40-210ENST00000454354 SH2D3AQ9BRG2 576 aa13.5□□□□□ -0.25
USP40-210ENST00000454354 LXNQ9BS40 222 aa13.5□□□□□ -0.25
USP40-210ENST00000454354 CYP26B1Q9NR63 512 aa13.5□□□□□ -0.25
USP40-210ENST00000454354 PCDHB7Q9Y5E2 793 aa13.5□□□□□ -0.25
USP40-210ENST00000454354 MARCH6O60337 910 aa13.49□□□□□ -0.25
USP40-210ENST00000454354 NEMFO60524 1076 aa13.49□□□□□ -0.25
USP40-210ENST00000454354 GATMP50440 423 aa13.49□□□□□ -0.25
USP40-210ENST00000454354 DNM2P50570 870 aa13.49□□□□□ -0.25
USP40-210ENST00000454354 KCNQ1P51787 676 aa13.49□□□□□ -0.25
USP40-210ENST00000454354 FOSBP53539 338 aa13.49□□□□□ -0.25
USP40-210ENST00000454354 HMGN5P82970 282 aaKnown RBP13.49□□□□□ -0.25
USP40-210ENST00000454354 CALCRLQ16602 461 aa13.49□□□□□ -0.25
USP40-210ENST00000454354 NCAPH2Q6IBW4 605 aa13.49□□□□□ -0.25
USP40-210ENST00000454354 ZNF410Q86VK4 478 aa13.49□□□□□ -0.25
USP40-210ENST00000454354 EXOC8Q8IYI6 725 aa13.49□□□□□ -0.25
USP40-210ENST00000454354 IL27Q8NEV9 243 aa13.49□□□□□ -0.25
USP40-210ENST00000454354 NLRP7Q8WX94 980 aa13.49□□□□□ -0.25
USP40-210ENST00000454354 C8orf76Q96K31 380 aa13.49□□□□□ -0.25
USP40-210ENST00000454354 NSUN3Q9H649 340 aaKnown RBP13.49□□□□□ -0.25
USP40-210ENST00000454354 DHX33Q9H6R0 707 aaKnown RBP13.49□□□□□ -0.25
USP40-210ENST00000454354 UBE2ZQ9H832 354 aaPredicted RBP13.49□□□□□ -0.25
USP40-210ENST00000454354 GRM6O15303 877 aa13.48□□□□□ -0.25
USP40-210ENST00000454354 GAS2O43903 313 aaKnown RBP13.48□□□□□ -0.25
USP40-210ENST00000454354 LYPLA2O95372 231 aa13.48□□□□□ -0.25
USP40-210ENST00000454354 YWHABP31946 246 aaKnown RBP13.48□□□□□ -0.25
USP40-210ENST00000454354 RFC5P40937 340 aa13.48□□□□□ -0.25
USP40-210ENST00000454354 NPEPPSP55786 919 aa13.48□□□□□ -0.25
USP40-210ENST00000454354 ORC2Q13416 577 aaPredicted RBP13.48□□□□□ -0.25
USP40-210ENST00000454354 RABEP1Q15276 862 aa13.48□□□□□ -0.25
USP40-210ENST00000454354 SAFBQ15424 915 aaKnown RBP eCLIP13.48□□□□□ -0.25
USP40-210ENST00000454354 PAN2Q504Q3 1202 aaKnown RBP13.48□□□□□ -0.25
USP40-210ENST00000454354 FBXO18Q8NFZ0 1043 aa13.48□□□□□ -0.25
USP40-210ENST00000454354 NEK9Q8TD19 979 aa13.48□□□□□ -0.25
USP40-210ENST00000454354 SLC7A3Q8WY07 619 aa13.48□□□□□ -0.25
USP40-210ENST00000454354 DYDC2Q96IM9 177 aa13.48□□□□□ -0.25
USP40-210ENST00000454354 ZNF668Q96K58 619 aaPredicted RBP13.48□□□□□ -0.25
USP40-210ENST00000454354 SCLT1Q96NL6 688 aa13.48□□□□□ -0.25
USP40-210ENST00000454354 MTMR9Q96QG7 549 aa13.48□□□□□ -0.25
USP40-210ENST00000454354 UHRF1Q96T88 793 aaPredicted RBP13.48□□□□□ -0.25
USP40-210ENST00000454354 GCOM2Q9BZD3 368 aaPredicted RBP13.48□□□□□ -0.25
USP40-210ENST00000454354 FOXP1Q9H334 677 aaPredicted RBP13.48□□□□□ -0.25
USP40-210ENST00000454354 ZSWIM4Q9H7M6 989 aa13.48□□□□□ -0.25
USP40-210ENST00000454354 ATP6V0A4Q9HBG4 840 aa13.48□□□□□ -0.25
USP40-210ENST00000454354 SUCLA2Q9P2R7 463 aaPredicted RBP13.48□□□□□ -0.25
USP40-210ENST00000454354 A0A087WZ62 844 aa13.47□□□□□ -0.25
USP40-210ENST00000454354 TBKBP1A7MCY6 615 aa13.47□□□□□ -0.25
USP40-210ENST00000454354 TNFRSF10AO00220 468 aa13.47□□□□□ -0.25
USP40-210ENST00000454354 HOXA2O43364 376 aa13.47□□□□□ -0.25
USP40-210ENST00000454354 SLITRK3O94933 977 aa13.47□□□□□ -0.25
USP40-210ENST00000454354 ITGB1P05556 798 aa13.47□□□□□ -0.25
USP40-210ENST00000454354 ZSCAN20P17040 1043 aaPredicted RBP13.47□□□□□ -0.25
USP40-210ENST00000454354 SFPQP23246 707 aaKnown RBP eCLIP13.47□□□□□ -0.25
USP40-210ENST00000454354 CAMK1Q14012 370 aa13.47□□□□□ -0.25
USP40-210ENST00000454354 TCEAL5Q5H9L2 206 aa13.47□□□□□ -0.25
USP40-210ENST00000454354 FAM102BQ5T8I3 360 aa13.47□□□□□ -0.25
USP40-210ENST00000454354 OTUD6AQ7L8S5 288 aa13.47□□□□□ -0.25
USP40-210ENST00000454354 ZNF598Q86UK7 904 aaKnown RBP13.47□□□□□ -0.25
USP40-210ENST00000454354 ECHDC2Q86YB7 292 aa13.47□□□□□ -0.25
USP40-210ENST00000454354 RHPN2Q8IUC4 686 aa13.47□□□□□ -0.25
USP40-210ENST00000454354 ZNF579Q8NAF0 562 aaKnown RBP13.47□□□□□ -0.25
USP40-210ENST00000454354 CEP170P1Q96L14 293 aa13.47□□□□□ -0.25
USP40-210ENST00000454354 HSD17B14Q9BPX1 270 aa13.47□□□□□ -0.25
USP40-210ENST00000454354 FDXACB1Q9BRP7 624 aaPredicted RBP13.47□□□□□ -0.25
USP40-210ENST00000454354 TRAIPQ9BWF2 469 aa13.47□□□□□ -0.25
USP40-210ENST00000454354 INO80BQ9C086 356 aaPredicted RBP13.47□□□□□ -0.25
USP40-210ENST00000454354 TMEM117Q9H0C3 514 aa13.47□□□□□ -0.25
USP40-210ENST00000454354 TTC12Q9H892 705 aaPredicted RBP13.47□□□□□ -0.25
USP40-210ENST00000454354 CHST12Q9NRB3 414 aa13.47□□□□□ -0.25
USP40-210ENST00000454354 RNF19AQ9NV58 838 aa13.47□□□□□ -0.25
USP40-210ENST00000454354 RGL1Q9NZL6 768 aa13.47□□□□□ -0.25
USP40-210ENST00000454354 PCDHA12Q9UN75 941 aa13.47□□□□□ -0.25
USP40-210ENST00000454354 PLAGL2Q9UPG8 496 aa13.47□□□□□ -0.25
USP40-210ENST00000454354 TDRD15B5MCY1 1934 aaKnown RBP13.47□□□□□ -0.25
USP40-210ENST00000454354 C5orf42Q9H799 3197 aa13.46□□□□□ -0.25
USP40-210ENST00000454354 A0A0U1RQF3 1178 aa13.46□□□□□ -0.25
USP40-210ENST00000454354 FGFR1P11362 822 aa13.46□□□□□ -0.25
USP40-210ENST00000454354 FGFR4P22455 802 aa13.46□□□□□ -0.25
USP40-210ENST00000454354 POLGP54098 1239 aaPredicted RBP13.46□□□□□ -0.25
USP40-210ENST00000454354 GUCY1B3Q02153 619 aa13.46□□□□□ -0.25
USP40-210ENST00000454354 CYP4A11Q02928 519 aa13.46□□□□□ -0.25
USP40-210ENST00000454354 CTTNQ14247 550 aaKnown RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms