RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 ZBTB33Q86T24 672 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 RYBPQ8N488 228 aaPredicted RBP8.31□□□□□ -1.08
NEDD9-204ENST00000448183 PSPC1Q8WXF1 523 aaKnown RBP8.31□□□□□ -1.08
NEDD9-204ENST00000448183 FAM161BQ96MY7 647 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 OLFM3Q96PB7 478 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 OSBPL1AQ9BXW6 950 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 ECT2Q9H8V3 914 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 PI4KBQ9UBF8 816 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 FBXL5Q9UKA1 691 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 CAPN11Q9UMQ6 739 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.31□□□□□ -1.08
NEDD9-204ENST00000448183 POTEMA6NI47 508 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 H7C1W4 665 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 PMLP29590 882 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 CCND2P30279 289 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 MCAMP43121 646 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 RAD23BP54727 409 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 ZNF211Q13398 564 aaPredicted RBP8.31□□□□□ -1.08
NEDD9-204ENST00000448183 KIF19Q2TAC6 998 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 TBC1D10CQ8IV04 446 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 GUF1Q8N442 669 aaKnown RBP8.31□□□□□ -1.08
NEDD9-204ENST00000448183 ARMC2Q8NEN0 867 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 HSPH1Q92598 858 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 ING2Q9H160 280 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 VIPAS39Q9H9C1 493 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 SUCLA2Q9P2R7 463 aaPredicted RBP8.31□□□□□ -1.08
NEDD9-204ENST00000448183 SFI1A8K8P3 1242 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 ERVV-1B6SEH8 477 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 BBOX1O75936 387 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 SLC4A1P02730 911 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 ATP1A1P05023 1023 aaKnown RBP8.3□□□□□ -1.08
NEDD9-204ENST00000448183 PRR29P0C7W0 189 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 ZNF18P17022 549 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 MECOMQ03112 1051 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 CDO1Q16878 200 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 ARL13BQ3SXY8 428 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 PPP6R3Q5H9R7 873 aaPredicted RBP8.3□□□□□ -1.08
NEDD9-204ENST00000448183 ZNF667Q5HYK9 610 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 PDXDC2PQ6P474 469 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 RGS9BPQ6ZS82 235 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 FAM160B2Q86V87 743 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 TRIM59Q8IWR1 403 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.3□□□□□ -1.08
NEDD9-204ENST00000448183 ZBTB18Q99592 522 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 TRIM33Q9UPN9 1127 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 OSTNP61366 133 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 YWHAHQ04917 246 aaPredicted RBP8.3□□□□□ -1.08
NEDD9-204ENST00000448183 ORC2Q13416 577 aaPredicted RBP8.3□□□□□ -1.08
NEDD9-204ENST00000448183 MORF4L2Q15014 288 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 ZNF564Q8TBZ8 553 aaPredicted RBP8.3□□□□□ -1.08
NEDD9-204ENST00000448183 RAD54LQ92698 747 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 STAMBPL1Q96FJ0 436 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 RPF1Q9H9Y2 349 aaKnown RBP8.3□□□□□ -1.08
NEDD9-204ENST00000448183 KIAA1586Q9HCI6 787 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 TTC7AQ9ULT0 858 aaPredicted RBP8.3□□□□□ -1.08
NEDD9-204ENST00000448183 NOC2LQ9Y3T9 749 aaKnown RBP8.3□□□□□ -1.08
NEDD9-204ENST00000448183 SHROOM2Q13796 1616 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 RNF103-CHMP3A0A140T963 221 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 CALB1P05937 261 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 CYP2C19P33261 490 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 GCLMP48507 274 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 PAPOLAP51003 745 aaKnown RBP8.3□□□□□ -1.08
NEDD9-204ENST00000448183 NOP14P78316 857 aaKnown RBP8.3□□□□□ -1.08
NEDD9-204ENST00000448183 COASYQ13057 564 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 DHX34Q14147 1143 aaKnown RBP8.3□□□□□ -1.08
NEDD9-204ENST00000448183 MB21D2Q8IYB1 491 aaPredicted RBP8.3□□□□□ -1.08
NEDD9-204ENST00000448183 TTLL11Q8NHH1 800 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 SCG3Q8WXD2 468 aaKnown RBP8.3□□□□□ -1.08
NEDD9-204ENST00000448183 TRPV6Q9H1D0 765 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 VPS11Q9H270 941 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 SCHIP1Q9P0W5 487 aaPredicted RBP8.3□□□□□ -1.08
NEDD9-204ENST00000448183 SLC4A7Q9Y6M7 1214 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 RFX7Q2KHR2 1363 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 CLRN2A0PK11 232 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 ARHGEF37A1IGU5 675 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 RASSF10A6NK89 507 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 PI4K2BG5E9Z4 385 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 KIF1CO43896 1103 aaKnown RBP8.3□□□□□ -1.08
NEDD9-204ENST00000448183 COPS2P61201 443 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 GUCY1A3Q02108 690 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 LRRC14Q15048 493 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 C16orf87Q6PH81 154 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 PPM1NQ8N819 430 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 OXER1Q8TDS5 423 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 ALDH8A1Q9H2A2 487 aaPredicted RBP8.3□□□□□ -1.08
NEDD9-204ENST00000448183 UBN1Q9NPG3 1134 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 CYP26B1Q9NR63 512 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 FNDC3AQ9Y2H6 1198 aaKnown RBP8.3□□□□□ -1.08
NEDD9-204ENST00000448183 SNX5Q9Y5X3 404 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 PFASO15067 1338 aa8.3□□□□□ -1.08
NEDD9-204ENST00000448183 E2F6O75461 281 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 PAMP19021 973 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 HOXA13P31271 388 aaPredicted RBP8.29□□□□□ -1.08
NEDD9-204ENST00000448183 ARHGDIAP52565 204 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 BYSLQ13895 437 aaKnown RBP8.29□□□□□ -1.08
NEDD9-204ENST00000448183 KNOP1Q1ED39 458 aaKnown RBP8.29□□□□□ -1.08
NEDD9-204ENST00000448183 CCDC137Q6PK04 289 aaKnown RBP8.29□□□□□ -1.08
NEDD9-204ENST00000448183 NLGN1Q8N2Q7 840 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 ATP11CQ8NB49 1132 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 PIGOQ8TEQ8 1089 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms