RNA–Protein interactions for RNA: ENST00000438647.3

RAPGEF1-206, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 3

Gene RAPGEF1, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-206ENST00000438647 CUL4AQ13619 759 aa27.62■■■□□ 2.01
RAPGEF1-206ENST00000438647 RILPL1Q5EBL4 403 aa27.62■■■□□ 2.01
RAPGEF1-206ENST00000438647 RHPN2Q8IUC4 686 aa27.62■■■□□ 2.01
RAPGEF1-206ENST00000438647 SLC17A8Q8NDX2 589 aa27.62■■■□□ 2.01
RAPGEF1-206ENST00000438647 ADAM2Q99965 735 aa27.62■■■□□ 2.01
RAPGEF1-206ENST00000438647 RGS18Q9NS28 235 aa27.62■■■□□ 2.01
RAPGEF1-206ENST00000438647 MTUS1Q9ULD2 1270 aa27.62■■■□□ 2.01
RAPGEF1-206ENST00000438647 LRFN2Q9ULH4 789 aa27.62■■■□□ 2.01
RAPGEF1-206ENST00000438647 ADGRA3Q8IWK6 1321 aa27.62■■■□□ 2.01
RAPGEF1-206ENST00000438647 EPOPA6NHQ4 379 aa27.61■■■□□ 2.01
RAPGEF1-206ENST00000438647 LAD1O00515 517 aa27.61■■■□□ 2.01
RAPGEF1-206ENST00000438647 SARSP49591 514 aaKnown RBP27.61■■■□□ 2.01
RAPGEF1-206ENST00000438647 LARP1BQ659C4 914 aaKnown RBP27.61■■■□□ 2.01
RAPGEF1-206ENST00000438647 SLC24A5Q71RS6 500 aa27.61■■■□□ 2.01
RAPGEF1-206ENST00000438647 FIBCD1Q8N539 461 aa27.61■■■□□ 2.01
RAPGEF1-206ENST00000438647 TCP11Q8WWU5 503 aa27.61■■■□□ 2.01
RAPGEF1-206ENST00000438647 PSPC1Q8WXF1 523 aaKnown RBP27.61■■■□□ 2.01
RAPGEF1-206ENST00000438647 ZNF668Q96K58 619 aaPredicted RBP27.61■■■□□ 2.01
RAPGEF1-206ENST00000438647 INO80BQ9C086 356 aaPredicted RBP27.61■■■□□ 2.01
RAPGEF1-206ENST00000438647 TUFT1Q9NNX1 390 aa27.61■■■□□ 2.01
RAPGEF1-206ENST00000438647 MGEA5O60502 916 aa27.6■■■□□ 2.01
RAPGEF1-206ENST00000438647 DGKIO75912 1065 aa27.6■■■□□ 2.01
RAPGEF1-206ENST00000438647 XRCC6P12956 609 aaKnown RBP eCLIP27.6■■■□□ 2.01
RAPGEF1-206ENST00000438647 ZSCAN20P17040 1043 aaPredicted RBP27.6■■■□□ 2.01
RAPGEF1-206ENST00000438647 POU3F3P20264 500 aaPredicted RBP27.6■■■□□ 2.01
RAPGEF1-206ENST00000438647 TOB1P50616 345 aaPredicted RBP27.6■■■□□ 2.01
RAPGEF1-206ENST00000438647 NBR1Q14596 966 aa27.6■■■□□ 2.01
RAPGEF1-206ENST00000438647 EMC2Q15006 297 aa27.6■■■□□ 2.01
RAPGEF1-206ENST00000438647 HAUS3Q68CZ6 603 aa27.6■■■□□ 2.01
RAPGEF1-206ENST00000438647 SPRED2Q7Z698 418 aa27.6■■■□□ 2.01
RAPGEF1-206ENST00000438647 ZNF579Q8NAF0 562 aaKnown RBP27.6■■■□□ 2.01
RAPGEF1-206ENST00000438647 RAB34Q9BZG1 259 aa27.6■■■□□ 2.01
RAPGEF1-206ENST00000438647 RC3H2Q9HBD1 1191 aaKnown RBP27.6■■■□□ 2.01
RAPGEF1-206ENST00000438647 PCDHB7Q9Y5E2 793 aa27.6■■■□□ 2.01
RAPGEF1-206ENST00000438647 RFXAPO00287 272 aa27.59■■■□□ 2.01
RAPGEF1-206ENST00000438647 FXR2P51116 673 aaKnown RBP eCLIP27.59■■■□□ 2.014e-8■■■■□ 24.7
RAPGEF1-206ENST00000438647 CRIPAKQ8N1N5 446 aa27.59■■■□□ 2.01
RAPGEF1-206ENST00000438647 ZNF689Q96CS4 500 aaPredicted RBP27.59■■■□□ 2.01
RAPGEF1-206ENST00000438647 NLRP4Q96MN2 994 aa27.59■■■□□ 2.01
RAPGEF1-206ENST00000438647 MTRQ99707 1265 aa27.59■■■□□ 2.01
RAPGEF1-206ENST00000438647 C17orf80Q9BSJ5 609 aa27.59■■■□□ 2.01
RAPGEF1-206ENST00000438647 POLR3CQ9BUI4 534 aaPredicted RBP27.59■■■□□ 2.01
RAPGEF1-206ENST00000438647 RWDD3Q9Y3V2 267 aa27.59■■■□□ 2.01
RAPGEF1-206ENST00000438647 PCDHB6Q9Y5E3 794 aa27.59■■■□□ 2.01
RAPGEF1-206ENST00000438647 COL4A3BPQ9Y5P4 624 aa27.59■■■□□ 2.01
RAPGEF1-206ENST00000438647 TRANK1O15050 2925 aa27.59■■■□□ 2.01
RAPGEF1-206ENST00000438647 PRUNE2Q8WUY3 3088 aa27.58■■■□□ 2.01
RAPGEF1-206ENST00000438647 A0A087WZ62 844 aa27.58■■■□□ 2.01
RAPGEF1-206ENST00000438647 ZBTB39O15060 712 aa27.58■■■□□ 2.01
RAPGEF1-206ENST00000438647 DGAT1O75907 488 aa27.58■■■□□ 2.01
RAPGEF1-206ENST00000438647 SFPQP23246 707 aaKnown RBP eCLIP27.58■■■□□ 2.01
RAPGEF1-206ENST00000438647 PTGDRQ13258 359 aa27.58■■■□□ 2.01
RAPGEF1-206ENST00000438647 GRB10Q13322 594 aa27.58■■■□□ 2.01
RAPGEF1-206ENST00000438647 BTG3Q14201 252 aaPredicted RBP27.58■■■□□ 2.01
RAPGEF1-206ENST00000438647 C4orf32Q8N8J7 132 aa27.58■■■□□ 2.01
RAPGEF1-206ENST00000438647 FBXO22Q8NEZ5 403 aa27.58■■■□□ 2.01
RAPGEF1-206ENST00000438647 FDXACB1Q9BRP7 624 aaPredicted RBP27.58■■■□□ 2.01
RAPGEF1-206ENST00000438647 STK24Q9Y6E0 443 aa27.58■■■□□ 2.01
RAPGEF1-206ENST00000438647 C9IYK1 514 aa27.57■■■□□ 2
RAPGEF1-206ENST00000438647 ASAP2O43150 1006 aa27.57■■■□□ 2
RAPGEF1-206ENST00000438647 SPATA31C1P0DKV0 1188 aa27.57■■■□□ 2
RAPGEF1-206ENST00000438647 PDCP20941 246 aa27.57■■■□□ 2
RAPGEF1-206ENST00000438647 RPA1P27694 616 aa27.57■■■□□ 2
RAPGEF1-206ENST00000438647 RARRES1P49788 294 aa27.57■■■□□ 2
RAPGEF1-206ENST00000438647 DSC3Q14574 896 aa27.57■■■□□ 2
RAPGEF1-206ENST00000438647 CATSPER3Q86XQ3 398 aa27.57■■■□□ 2
RAPGEF1-206ENST00000438647 CMTR2Q8IYT2 770 aaKnown RBP27.57■■■□□ 2
RAPGEF1-206ENST00000438647 GDPD5Q8WTR4 605 aa27.57■■■□□ 2
RAPGEF1-206ENST00000438647 TMEM143Q96AN5 459 aa27.57■■■□□ 2
RAPGEF1-206ENST00000438647 ATP6V0A4Q9HBG4 840 aa27.57■■■□□ 2
RAPGEF1-206ENST00000438647 BMP2KQ9NSY1 1161 aaPredicted RBP27.57■■■□□ 2
RAPGEF1-206ENST00000438647 LMCD1Q9NZU5 365 aa27.57■■■□□ 2
RAPGEF1-206ENST00000438647 MTCH2Q9Y6C9 303 aa27.57■■■□□ 2
RAPGEF1-206ENST00000438647 MUTP22033 750 aa27.56■■■□□ 2
RAPGEF1-206ENST00000438647 PDIA5Q14554 519 aa27.56■■■□□ 2
RAPGEF1-206ENST00000438647 EPC2Q52LR7 807 aa27.56■■■□□ 2
RAPGEF1-206ENST00000438647 TMEM192Q8IY95 271 aa27.56■■■□□ 2
RAPGEF1-206ENST00000438647 PIGOQ8TEQ8 1089 aa27.56■■■□□ 2
RAPGEF1-206ENST00000438647 PRPF31Q8WWY3 499 aaKnown RBP27.56■■■□□ 2
RAPGEF1-206ENST00000438647 PPM1EQ8WY54 764 aa27.56■■■□□ 2
RAPGEF1-206ENST00000438647 NACC1Q96RE7 527 aa27.56■■■□□ 2
RAPGEF1-206ENST00000438647 ELAC1Q9H777 363 aaKnown RBP27.56■■■□□ 2
RAPGEF1-206ENST00000438647 EIF4ENIF1Q9NRA8 985 aaKnown RBP27.56■■■□□ 2
RAPGEF1-206ENST00000438647 DACT1Q9NYF0 836 aa27.56■■■□□ 2
RAPGEF1-206ENST00000438647 LRWD1Q9UFC0 647 aa27.56■■■□□ 2
RAPGEF1-206ENST00000438647 MED24O75448 989 aa27.55■■■□□ 2
RAPGEF1-206ENST00000438647 IBSPP21815 317 aaPredicted RBP27.55■■■□□ 2
RAPGEF1-206ENST00000438647 PRPHP41219 470 aa27.55■■■□□ 2
RAPGEF1-206ENST00000438647 MXD4Q14582 209 aaPredicted RBP27.55■■■□□ 2
RAPGEF1-206ENST00000438647 KSR1Q8IVT5 923 aa27.55■■■□□ 2
RAPGEF1-206ENST00000438647 CHST12Q9NRB3 414 aa27.55■■■□□ 2
RAPGEF1-206ENST00000438647 TMEM161AQ9NX61 479 aa27.55■■■□□ 2
RAPGEF1-206ENST00000438647 LPXNO60711 386 aa27.54■■■□□ 2
RAPGEF1-206ENST00000438647 FAM189BP81408 668 aa27.54■■■□□ 2
RAPGEF1-206ENST00000438647 LAMTOR4Q0VGL1 99 aa27.54■■■□□ 2
RAPGEF1-206ENST00000438647 ARID2Q68CP9 1835 aa27.54■■■□□ 2
RAPGEF1-206ENST00000438647 FERMT3Q86UX7 667 aa27.54■■■□□ 2
RAPGEF1-206ENST00000438647 PHF6Q8IWS0 365 aaKnown RBP eCLIP27.54■■■□□ 2
RAPGEF1-206ENST00000438647 MICALL1Q8N3F8 863 aa27.54■■■□□ 2
RAPGEF1-206ENST00000438647 CLP1Q92989 425 aaKnown RBP27.54■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms