RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 POU5F1Q01860 360 aaKnown RBP7.83□□□□□ -1.16
COL28A1-202ENST00000430711 PAK2Q13177 524 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 EXOC3L4Q17RC7 722 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 KNOP1Q1ED39 458 aaKnown RBP7.83□□□□□ -1.16
COL28A1-202ENST00000430711 ALS2CLQ60I27 953 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 CCDC65Q8IXS2 484 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 EFCAB13Q8IY85 973 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 SYN2Q92777 582 aaPredicted RBP7.83□□□□□ -1.16
COL28A1-202ENST00000430711 BTBD6Q96KE9 485 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 CEP63Q96MT8 703 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 SPAG5Q96R06 1193 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 CCT8L2Q96SF2 557 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 POP1Q99575 1024 aaKnown RBP7.83□□□□□ -1.16
COL28A1-202ENST00000430711 TAF1DQ9H5J8 278 aaPredicted RBP7.83□□□□□ -1.16
COL28A1-202ENST00000430711 PKD2L1Q9P0L9 805 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 BCCIPQ9P287 314 aaKnown RBP eCLIP7.83□□□□□ -1.16
COL28A1-202ENST00000430711 ARMCX3Q9UH62 379 aaPredicted RBP7.83□□□□□ -1.16
COL28A1-202ENST00000430711 CAPN7Q9Y6W3 813 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 SLX4Q8IY92 1834 aa7.82□□□□□ -1.16
COL28A1-202ENST00000430711 IGLV3-22A0A075B6J6 115 aa7.82□□□□□ -1.16
COL28A1-202ENST00000430711 PHF20L1A8MW92 1017 aa7.82□□□□□ -1.16
COL28A1-202ENST00000430711 DNM1LO00429 736 aa7.82□□□□□ -1.16
COL28A1-202ENST00000430711 EBAG9O00559 213 aa7.82□□□□□ -1.16
COL28A1-202ENST00000430711 DDX3YO15523 660 aaKnown RBP7.82□□□□□ -1.16
COL28A1-202ENST00000430711 PPP1R37O75864 691 aa7.82□□□□□ -1.16
COL28A1-202ENST00000430711 ERLIN2O94905 339 aa7.82□□□□□ -1.16
COL28A1-202ENST00000430711 MDH1P40925 334 aaKnown RBP7.82□□□□□ -1.16
COL28A1-202ENST00000430711 IFT88Q13099 833 aa7.82□□□□□ -1.16
COL28A1-202ENST00000430711 SEMA3FQ13275 785 aa7.82□□□□□ -1.16
COL28A1-202ENST00000430711 DGKZQ13574 1117 aa7.82□□□□□ -1.16
COL28A1-202ENST00000430711 ICE2Q659A1 982 aa7.82□□□□□ -1.16
COL28A1-202ENST00000430711 SLFN13Q68D06 897 aa7.82□□□□□ -1.16
COL28A1-202ENST00000430711 NLRP14Q86W24 1093 aa7.82□□□□□ -1.16
COL28A1-202ENST00000430711 MREGQ8N565 214 aa7.82□□□□□ -1.16
COL28A1-202ENST00000430711 PLEKHO2Q8TD55 490 aa7.82□□□□□ -1.16
COL28A1-202ENST00000430711 PPM1EQ8WY54 764 aa7.82□□□□□ -1.16
COL28A1-202ENST00000430711 MBOAT7Q96N66 472 aa7.82□□□□□ -1.16
COL28A1-202ENST00000430711 RUFY1Q96T51 708 aa7.82□□□□□ -1.16
COL28A1-202ENST00000430711 SYT11Q9BT88 431 aa7.82□□□□□ -1.16
COL28A1-202ENST00000430711 THAP2Q9H0W7 228 aa7.82□□□□□ -1.16
COL28A1-202ENST00000430711 ISCUQ9H1K1 167 aa7.82□□□□□ -1.16
COL28A1-202ENST00000430711 CD248Q9HCU0 757 aa7.82□□□□□ -1.16
COL28A1-202ENST00000430711 CENPFP49454 3210 aa7.82□□□□□ -1.16
COL28A1-202ENST00000430711 A0A087WUV0 522 aaPredicted RBP7.81□□□□□ -1.16
COL28A1-202ENST00000430711 SMIM23A6NLE4 172 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 E7EVH7 732 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 TULP1O00294 542 aaPredicted RBP7.81□□□□□ -1.16
COL28A1-202ENST00000430711 CETN3O15182 167 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 MAP3K13O43283 966 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 OPA1O60313 960 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 ATP2C2O75185 946 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 NDUFB10O96000 172 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 FGGP02679 453 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 CYP3A4P08684 503 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 GUCY2CP25092 1073 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 PPP1R2P41236 205 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 EPS15P42566 896 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 CYP2J2P51589 502 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 MRPL12P52815 198 aaKnown RBP7.81□□□□□ -1.16
COL28A1-202ENST00000430711 ARHGAP44Q17R89 818 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 DAB2IPQ5VWQ8 1189 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 PHLDB3Q6NSJ2 640 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 RINT1Q6NUQ1 792 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 TTC27Q6P3X3 843 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 TMC3Q7Z5M5 1100 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 DAAM2Q86T65 1068 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 ARHGEF19Q8IW93 802 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 SYT2Q8N9I0 419 aaPredicted RBP7.81□□□□□ -1.16
COL28A1-202ENST00000430711 SLC30A5Q8TAD4 765 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 UBLCP1Q8WVY7 318 aaPredicted RBP7.81□□□□□ -1.16
COL28A1-202ENST00000430711 DYDC2Q96IM9 177 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 EIF2AK1Q9BQI3 630 aaKnown RBP7.81□□□□□ -1.16
COL28A1-202ENST00000430711 OSBPL7Q9BZF2 842 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 RAB34Q9BZG1 259 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 EDEM3Q9BZQ6 932 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 TSPYL1Q9H0U9 437 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 ZNF287Q9HBT7 754 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 TRAF3IP3Q9Y228 551 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 MYH11P35749 1972 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 F5H6K3 240 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 F8VZ95 297 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 DDX39AO00148 427 aaKnown RBP7.81□□□□□ -1.16
COL28A1-202ENST00000430711 KRIT1O00522 736 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 PPEF1O14829 653 aaPredicted RBP7.81□□□□□ -1.16
COL28A1-202ENST00000430711 TOMM70O94826 608 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 XRCC5P13010 732 aaKnown RBP7.81□□□□□ -1.16
COL28A1-202ENST00000430711 YBX3P16989 372 aaKnown RBP eCLIP7.81□□□□□ -1.16
COL28A1-202ENST00000430711 MAGOHP61326 146 aaKnown RBP7.81□□□□□ -1.16
COL28A1-202ENST00000430711 KLRC3Q07444 240 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 ORC2Q13416 577 aaPredicted RBP7.81□□□□□ -1.16
COL28A1-202ENST00000430711 EDRF1Q3B7T1 1238 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 CCDC70Q6NSX1 233 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 LLGL2Q6P1M3 1020 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 SLFN11Q7Z7L1 901 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 SLC35G2Q8TBE7 412 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 ACER1Q8TDN7 264 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 MAGOHBQ96A72 148 aaKnown RBP7.81□□□□□ -1.16
COL28A1-202ENST00000430711 C18orf8Q96DM3 657 aa7.81□□□□□ -1.16
COL28A1-202ENST00000430711 JPH2Q9BR39 696 aaPredicted RBP7.81□□□□□ -1.16
COL28A1-202ENST00000430711 EPN3Q9H201 632 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms