RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 BHMT2Q9H2M3 363 aa13.84□□□□□ -0.19
USP40-205ENST00000430158 GDPD2Q9HCC8 539 aa13.84□□□□□ -0.19
USP40-205ENST00000430158 DNM3Q9UQ16 869 aa13.84□□□□□ -0.19
USP40-205ENST00000430158 RSPH10B2B2RC85 870 aa13.83□□□□□ -0.2
USP40-205ENST00000430158 DGAT1O75907 488 aa13.83□□□□□ -0.2
USP40-205ENST00000430158 RPLP2P05387 115 aaKnown RBP13.83□□□□□ -0.2
USP40-205ENST00000430158 RSPH10BP0C881 870 aa13.83□□□□□ -0.2
USP40-205ENST00000430158 CSF2RAP15509 400 aa13.83□□□□□ -0.2
USP40-205ENST00000430158 ARL2P36404 184 aa13.83□□□□□ -0.2
USP40-205ENST00000430158 ME1P48163 572 aa13.83□□□□□ -0.2
USP40-205ENST00000430158 MDM2Q00987 491 aaPredicted RBP13.83□□□□□ -0.2
USP40-205ENST00000430158 ARSHQ5FYA8 562 aa13.83□□□□□ -0.2
USP40-205ENST00000430158 ADALQ6DHV7 355 aa13.83□□□□□ -0.2
USP40-205ENST00000430158 RINT1Q6NUQ1 792 aa13.83□□□□□ -0.2
USP40-205ENST00000430158 CLEC17AQ6ZS10 378 aa13.83□□□□□ -0.2
USP40-205ENST00000430158 DAW1Q8N136 415 aa13.83□□□□□ -0.2
USP40-205ENST00000430158 METTL13Q8N6R0 699 aa13.83□□□□□ -0.2
USP40-205ENST00000430158 SYT2Q8N9I0 419 aaPredicted RBP13.83□□□□□ -0.2
USP40-205ENST00000430158 RETREG2Q8NC44 543 aa13.83□□□□□ -0.2
USP40-205ENST00000430158 RAD54LQ92698 747 aa13.83□□□□□ -0.2
USP40-205ENST00000430158 TMEM143Q96AN5 459 aa13.83□□□□□ -0.2
USP40-205ENST00000430158 RUSC1Q9BVN2 902 aa13.83□□□□□ -0.2
USP40-205ENST00000430158 CELF4Q9BZC1 486 aaKnown RBP13.83□□□□□ -0.2
USP40-205ENST00000430158 SUGCTQ9HAC7 445 aa13.83□□□□□ -0.2
USP40-205ENST00000430158 PRKAG2Q9UGJ0 569 aa13.83□□□□□ -0.2
USP40-205ENST00000430158 CDY2AQ9Y6F7 541 aa13.83□□□□□ -0.2
USP40-205ENST00000430158 MICAL3Q7RTP6 2002 aa13.82□□□□□ -0.2
USP40-205ENST00000430158 GAS2O43903 313 aaKnown RBP13.82□□□□□ -0.2
USP40-205ENST00000430158 VTNP04004 478 aa13.82□□□□□ -0.2
USP40-205ENST00000430158 PLA2G4BP0C869 781 aa13.82□□□□□ -0.2
USP40-205ENST00000430158 NCLP19338 710 aaKnown RBP13.82□□□□□ -0.2
USP40-205ENST00000430158 CMA1P23946 247 aa13.82□□□□□ -0.2
USP40-205ENST00000430158 BMP8BP34820 402 aa13.82□□□□□ -0.2
USP40-205ENST00000430158 RFC2P35250 354 aa13.82□□□□□ -0.2
USP40-205ENST00000430158 GPC3P51654 580 aa13.82□□□□□ -0.2
USP40-205ENST00000430158 TMEM62Q0P6H9 643 aa13.82□□□□□ -0.2
USP40-205ENST00000430158 MAPK7Q13164 816 aa13.82□□□□□ -0.2
USP40-205ENST00000430158 LPIN1Q14693 890 aa13.82□□□□□ -0.2
USP40-205ENST00000430158 FBXO47Q5MNV8 452 aa13.82□□□□□ -0.2
USP40-205ENST00000430158 IER5Q5VY09 327 aa13.82□□□□□ -0.2
USP40-205ENST00000430158 EXOC8Q8IYI6 725 aa13.82□□□□□ -0.2
USP40-205ENST00000430158 ASAP3Q8TDY4 903 aa13.82□□□□□ -0.2
USP40-205ENST00000430158 TMEM40Q8WWA1 233 aa13.82□□□□□ -0.2
USP40-205ENST00000430158 PRPF31Q8WWY3 499 aaKnown RBP13.82□□□□□ -0.2
USP40-205ENST00000430158 SLC7A3Q8WY07 619 aa13.82□□□□□ -0.2
USP40-205ENST00000430158 CALML4Q96GE6 196 aa13.82□□□□□ -0.2
USP40-205ENST00000430158 JPH2Q9BR39 696 aaPredicted RBP13.82□□□□□ -0.2
USP40-205ENST00000430158 ATP6V0A4Q9HBG4 840 aa13.82□□□□□ -0.2
USP40-205ENST00000430158 IL23AQ9NPF7 189 aa13.82□□□□□ -0.2
USP40-205ENST00000430158 SUCLA2Q9P2R7 463 aaPredicted RBP13.82□□□□□ -0.2
USP40-205ENST00000430158 HPSEQ9Y251 543 aa13.82□□□□□ -0.2
USP40-205ENST00000430158 TRPV2Q9Y5S1 764 aa13.82□□□□□ -0.2
USP40-205ENST00000430158 TTC3P53804 2025 aa13.81□□□□□ -0.2
USP40-205ENST00000430158 A0A1W2PQ27 194 aa13.81□□□□□ -0.2
USP40-205ENST00000430158 A0A1W2PQ64 194 aa13.81□□□□□ -0.2
USP40-205ENST00000430158 A0A1W2PQD8 194 aa13.81□□□□□ -0.2
USP40-205ENST00000430158 ARHGEF35A5YM69 484 aa13.81□□□□□ -0.2
USP40-205ENST00000430158 USO1O60763 962 aaKnown RBP13.81□□□□□ -0.2
USP40-205ENST00000430158 PARNO95453 639 aaKnown RBP13.81□□□□□ -0.2
USP40-205ENST00000430158 CTSHP09668 335 aa13.81□□□□□ -0.2
USP40-205ENST00000430158 TMOD1P28289 359 aa13.81□□□□□ -0.2
USP40-205ENST00000430158 POLGP54098 1239 aaPredicted RBP13.81□□□□□ -0.2
USP40-205ENST00000430158 FPGSQ05932 587 aa13.81□□□□□ -0.2
USP40-205ENST00000430158 MCM6Q14566 821 aa13.81□□□□□ -0.2
USP40-205ENST00000430158 ZRSR1Q15695 479 aaKnown RBP13.81□□□□□ -0.2
USP40-205ENST00000430158 TMEM240Q5SV17 173 aa13.81□□□□□ -0.2
USP40-205ENST00000430158 RASIP1Q5U651 963 aa13.81□□□□□ -0.2
USP40-205ENST00000430158 RSPH3Q86UC2 560 aa13.81□□□□□ -0.2
USP40-205ENST00000430158 KSR1Q8IVT5 923 aa13.81□□□□□ -0.2
USP40-205ENST00000430158 ZNF710Q8N1W2 664 aa13.81□□□□□ -0.2
USP40-205ENST00000430158 TMEM199Q8N511 208 aa13.81□□□□□ -0.2
USP40-205ENST00000430158 BSNDQ8WZ55 320 aa13.81□□□□□ -0.2
USP40-205ENST00000430158 MTRQ99707 1265 aa13.81□□□□□ -0.2
USP40-205ENST00000430158 PANK2Q9BZ23 570 aa13.81□□□□□ -0.2
USP40-205ENST00000430158 AGO3Q9H9G7 860 aaKnown RBP13.81□□□□□ -0.2
USP40-205ENST00000430158 IFT122Q9HBG6 1241 aa13.81□□□□□ -0.2
USP40-205ENST00000430158 GPRC5CQ9NQ84 441 aa13.81□□□□□ -0.2
USP40-205ENST00000430158 STK17AQ9UEE5 414 aa13.81□□□□□ -0.2
USP40-205ENST00000430158 SQORQ9Y6N5 450 aa13.81□□□□□ -0.2
USP40-205ENST00000430158 LAMA2P24043 3122 aaKnown RBP13.81□□□□□ -0.2
USP40-205ENST00000430158 GLRA2P23416 452 aa13.8□□□□□ -0.2
USP40-205ENST00000430158 GUCY2CP25092 1073 aa13.8□□□□□ -0.2
USP40-205ENST00000430158 CRYBB1P53674 252 aaPredicted RBP13.8□□□□□ -0.2
USP40-205ENST00000430158 NLRP11P59045 1033 aaKnown RBP13.8□□□□□ -0.2
USP40-205ENST00000430158 LAMTOR4Q0VGL1 99 aa13.8□□□□□ -0.2
USP40-205ENST00000430158 PPIGQ13427 754 aaKnown RBP eCLIP13.8□□□□□ -0.21e-6■■□□□ 12.8
USP40-205ENST00000430158 KIZQ2M2Z5 673 aa13.8□□□□□ -0.2
USP40-205ENST00000430158 PLEKHG4Q58EX7 1191 aa13.8□□□□□ -0.2
USP40-205ENST00000430158 RRAGBQ5VZM2 374 aa13.8□□□□□ -0.2
USP40-205ENST00000430158 IFNLR1Q8IU57 520 aaPredicted RBP13.8□□□□□ -0.2
USP40-205ENST00000430158 TMEM87AQ8NBN3 555 aa13.8□□□□□ -0.2
USP40-205ENST00000430158 MCPH1Q8NEM0 835 aa13.8□□□□□ -0.2
USP40-205ENST00000430158 MAP7D2Q96T17 732 aa13.8□□□□□ -0.2
USP40-205ENST00000430158 GOLPH3LQ9H4A5 285 aa13.8□□□□□ -0.2
USP40-205ENST00000430158 OCEL1Q9H607 264 aa13.8□□□□□ -0.2
USP40-205ENST00000430158 POLD4Q9HCU8 107 aa13.8□□□□□ -0.2
USP40-205ENST00000430158 PTPRSQ13332 1948 aa13.8□□□□□ -0.2
USP40-205ENST00000430158 LAMA3Q16787 3333 aa13.79□□□□□ -0.2
USP40-205ENST00000430158 ASAP2O43150 1006 aa13.79□□□□□ -0.2
USP40-205ENST00000430158 ACRP10323 421 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms