RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 PITRM1Q5JRX3 1037 aa5.62□□□□□ -1.51
USP40-204ENST00000427947 Q6ZUG5 572 aa5.62□□□□□ -1.51
USP40-204ENST00000427947 GPR155Q7Z3F1 870 aa5.62□□□□□ -1.51
USP40-204ENST00000427947 EAF2Q96CJ1 260 aaPredicted RBP5.62□□□□□ -1.51
USP40-204ENST00000427947 LCORQ96JN0 433 aaPredicted RBP5.62□□□□□ -1.51
USP40-204ENST00000427947 PUS7Q96PZ0 661 aaKnown RBP5.62□□□□□ -1.51
USP40-204ENST00000427947 CEP89Q96ST8 783 aa5.62□□□□□ -1.51
USP40-204ENST00000427947 NOL10Q9BSC4 688 aaKnown RBP5.62□□□□□ -1.51
USP40-204ENST00000427947 PITHD1Q9GZP4 211 aaPredicted RBP5.62□□□□□ -1.51
USP40-204ENST00000427947 WNT8AQ9H1J5 351 aa5.62□□□□□ -1.51
USP40-204ENST00000427947 DENND2AQ9ULE3 1009 aa5.62□□□□□ -1.51
USP40-204ENST00000427947 USP18Q9UMW8 372 aa5.62□□□□□ -1.51
USP40-204ENST00000427947 EDARQ9UNE0 448 aa5.62□□□□□ -1.51
USP40-204ENST00000427947 ZDHHC9Q9Y397 364 aa5.62□□□□□ -1.51
USP40-204ENST00000427947 NUMBLQ9Y6R0 609 aa5.62□□□□□ -1.51
USP40-204ENST00000427947 C9orf118A6NHY6 69 aa5.61□□□□□ -1.51
USP40-204ENST00000427947 GABRDO14764 452 aa5.61□□□□□ -1.51
USP40-204ENST00000427947 TRIM13O60858 407 aa5.61□□□□□ -1.51
USP40-204ENST00000427947 H2AFYO75367 372 aaKnown RBP5.61□□□□□ -1.51
USP40-204ENST00000427947 ZSCAN22P10073 491 aaPredicted RBP5.61□□□□□ -1.51
USP40-204ENST00000427947 MYBL2P10244 700 aa5.61□□□□□ -1.51
USP40-204ENST00000427947 GPR3P46089 330 aa5.61□□□□□ -1.51
USP40-204ENST00000427947 KCNC1P48547 511 aa5.61□□□□□ -1.51
USP40-204ENST00000427947 RRADP55042 308 aa5.61□□□□□ -1.51
USP40-204ENST00000427947 GJA9P57773 515 aa5.61□□□□□ -1.51
USP40-204ENST00000427947 ANTXR2P58335 489 aa5.61□□□□□ -1.51
USP40-204ENST00000427947 PPARAQ07869 468 aa5.61□□□□□ -1.51
USP40-204ENST00000427947 EIF4HQ15056 248 aaKnown RBP5.61□□□□□ -1.51
USP40-204ENST00000427947 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.61□□□□□ -1.51
USP40-204ENST00000427947 BMP8AQ7Z5Y6 402 aa5.61□□□□□ -1.51
USP40-204ENST00000427947 REXO1L1PQ8IX06 675 aa5.61□□□□□ -1.51
USP40-204ENST00000427947 AMOTL1Q8IY63 956 aa5.61□□□□□ -1.51
USP40-204ENST00000427947 BCL6BQ8N143 479 aaPredicted RBP5.61□□□□□ -1.51
USP40-204ENST00000427947 CBARPQ8N350 705 aaPredicted RBP5.61□□□□□ -1.51
USP40-204ENST00000427947 KLHL36Q8N4N3 616 aa5.61□□□□□ -1.51
USP40-204ENST00000427947 CDYL2Q8N8U2 506 aa5.61□□□□□ -1.51
USP40-204ENST00000427947 DYDC2Q96IM9 177 aa5.61□□□□□ -1.51
USP40-204ENST00000427947 KATNBL1Q9H079 304 aa5.61□□□□□ -1.51
USP40-204ENST00000427947 QRSL1Q9H0R6 528 aaKnown RBP5.61□□□□□ -1.51
USP40-204ENST00000427947 PRDM12Q9H4Q4 367 aa5.61□□□□□ -1.51
USP40-204ENST00000427947 CCM2LQ9NUG4 571 aaPredicted RBP5.61□□□□□ -1.51
USP40-204ENST00000427947 POLR3BQ9NW08 1133 aaPredicted RBP5.61□□□□□ -1.51
USP40-204ENST00000427947 SAE1Q9UBE0 346 aaPredicted RBP5.61□□□□□ -1.51
USP40-204ENST00000427947 TMPRSS11EQ9UL52 423 aa5.61□□□□□ -1.51
USP40-204ENST00000427947 PCDHB6Q9Y5E3 794 aa5.61□□□□□ -1.51
USP40-204ENST00000427947 A0A0A6YYJ9 748 aa5.6□□□□□ -1.51
USP40-204ENST00000427947 MROH6A6NGR9 719 aa5.6□□□□□ -1.51
USP40-204ENST00000427947 ZNF888P0CJ79 500 aaPredicted RBP5.6□□□□□ -1.51
USP40-204ENST00000427947 LGALS4P56470 323 aa5.6□□□□□ -1.51
USP40-204ENST00000427947 TRIM25Q14258 630 aaKnown RBP5.6□□□□□ -1.51
USP40-204ENST00000427947 NT5DC1Q5TFE4 455 aa5.6□□□□□ -1.51
USP40-204ENST00000427947 PGM2L1Q6PCE3 622 aa5.6□□□□□ -1.51
USP40-204ENST00000427947 FAM124AQ86V42 546 aa5.6□□□□□ -1.51
USP40-204ENST00000427947 SP8Q8IXZ3 490 aa5.6□□□□□ -1.51
USP40-204ENST00000427947 RTKN2Q8IZC4 609 aa5.6□□□□□ -1.51
USP40-204ENST00000427947 SYT8Q8NBV8 401 aa5.6□□□□□ -1.51
USP40-204ENST00000427947 GAB3Q8WWW8 586 aa5.6□□□□□ -1.51
USP40-204ENST00000427947 AJUBAQ96IF1 538 aa5.6□□□□□ -1.51
USP40-204ENST00000427947 HIST1H2AHQ96KK5 128 aa5.6□□□□□ -1.51
USP40-204ENST00000427947 HIST1H2AJQ99878 128 aa5.6□□□□□ -1.51
USP40-204ENST00000427947 CARD11Q9BXL7 1154 aa5.6□□□□□ -1.51
USP40-204ENST00000427947 KCTD10Q9H3F6 313 aa5.6□□□□□ -1.51
USP40-204ENST00000427947 LUC7LQ9NQ29 371 aaKnown RBP5.6□□□□□ -1.51
USP40-204ENST00000427947 DNAJC28Q9NX36 388 aa5.6□□□□□ -1.51
USP40-204ENST00000427947 PRSS50Q9UI38 385 aa5.6□□□□□ -1.51
USP40-204ENST00000427947 DNAI1Q9UI46 699 aa5.6□□□□□ -1.51
USP40-204ENST00000427947 ADAM29Q9UKF5 820 aa5.6□□□□□ -1.51
USP40-204ENST00000427947 SYNPO2Q9UMS6 1093 aa5.6□□□□□ -1.51
USP40-204ENST00000427947 CELA3BP08861 270 aa5.59□□□□□ -1.51
USP40-204ENST00000427947 BMP7P18075 431 aa5.59□□□□□ -1.51
USP40-204ENST00000427947 CSF2RBP32927 897 aa5.59□□□□□ -1.51
USP40-204ENST00000427947 MEOX1P50221 254 aa5.59□□□□□ -1.51
USP40-204ENST00000427947 SRSF2Q01130 221 aaKnown RBP5.59□□□□□ -1.51
USP40-204ENST00000427947 SPIDRQ14159 915 aa5.59□□□□□ -1.51
USP40-204ENST00000427947 USP10Q14694 798 aaKnown RBP5.59□□□□□ -1.51
USP40-204ENST00000427947 CLUL1Q15846 466 aa5.59□□□□□ -1.51
USP40-204ENST00000427947 PTPN21Q16825 1174 aa5.59□□□□□ -1.51
USP40-204ENST00000427947 INAVAQ3KP66 663 aa5.59□□□□□ -1.51
USP40-204ENST00000427947 TOR2AQ5JU69 321 aa5.59□□□□□ -1.51
USP40-204ENST00000427947 LARP4Q71RC2 724 aaKnown RBP eCLIP5.59□□□□□ -1.51
USP40-204ENST00000427947 RALYLQ86SE5 291 aaKnown RBP5.59□□□□□ -1.51
USP40-204ENST00000427947 LYSMD2Q8IV50 215 aa5.59□□□□□ -1.51
USP40-204ENST00000427947 C1orf162Q8NEQ5 155 aaPredicted RBP5.59□□□□□ -1.51
USP40-204ENST00000427947 OR14C36Q8NHC7 312 aa5.59□□□□□ -1.51
USP40-204ENST00000427947 MBD6Q96DN6 1003 aa5.59□□□□□ -1.51
USP40-204ENST00000427947 ORAI2Q96SN7 254 aa5.59□□□□□ -1.51
USP40-204ENST00000427947 HAPLN2Q9GZV7 340 aa5.59□□□□□ -1.51
USP40-204ENST00000427947 KIAA1683Q9H0B3 1180 aa5.59□□□□□ -1.51
USP40-204ENST00000427947 USP40Q9NVE5 1235 aa5.59□□□□□ -1.51
USP40-204ENST00000427947 MKS1Q9NXB0 559 aa5.59□□□□□ -1.51
USP40-204ENST00000427947 FAM184BQ9ULE4 1060 aa5.59□□□□□ -1.51
USP40-204ENST00000427947 PTPN22Q9Y2R2 807 aa5.59□□□□□ -1.51
USP40-204ENST00000427947 TNKSO95271 1327 aa5.58□□□□□ -1.52
USP40-204ENST00000427947 SHTN1A0MZ66 631 aa5.58□□□□□ -1.52
USP40-204ENST00000427947 NOBOXO60393 691 aa5.58□□□□□ -1.52
USP40-204ENST00000427947 CFBP00751 764 aa5.58□□□□□ -1.52
USP40-204ENST00000427947 OSMP13725 252 aa5.58□□□□□ -1.52
USP40-204ENST00000427947 XPAP23025 273 aaPredicted RBP5.58□□□□□ -1.52
USP40-204ENST00000427947 MRE11P49959 708 aa5.58□□□□□ -1.52
USP40-204ENST00000427947 MRPS9P82933 396 aaKnown RBP5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms