RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 AK8Q96MA6 479 aa11.52□□□□□ -0.56
TCOF1-204ENST00000427724 NUP58Q9BVL2 599 aa11.52□□□□□ -0.56
TCOF1-204ENST00000427724 POTEFA5A3E0 1075 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 TADA3O75528 432 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 PLCG1P19174 1290 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 HPDP32754 393 aaPredicted RBP11.52□□□□□ -0.57
TCOF1-204ENST00000427724 GNGT1P63211 74 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 POTEGQ6S5H5 508 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 POTEEQ6S8J3 1075 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 ARMCX2Q7L311 632 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 NKX2-3Q8TAU0 364 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 FAM71BQ8TC56 605 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 PPP1R13LQ8WUF5 828 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 PANX2Q96RD6 677 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 POLR3FQ9H1D9 316 aaPredicted RBP11.52□□□□□ -0.57
TCOF1-204ENST00000427724 VWA5AO00534 786 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 RNF40O75150 1001 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 NR2F2P24468 414 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 TCF7P36402 384 aaPredicted RBP11.52□□□□□ -0.57
TCOF1-204ENST00000427724 ARL1P40616 181 aaPredicted RBP11.52□□□□□ -0.57
TCOF1-204ENST00000427724 LBX1P52954 281 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 CUL4BQ13620 913 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 IFI16Q16666 785 aaKnown RBP11.52□□□□□ -0.57
TCOF1-204ENST00000427724 XKR3Q5GH77 459 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 LIN9Q5TKA1 542 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 PPP1R18Q6NYC8 613 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 NECAB2Q7Z6G3 386 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 FAM163AQ96GL9 167 aaPredicted RBP11.52□□□□□ -0.57
TCOF1-204ENST00000427724 ABCB6Q9NP58 842 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 RIC8AQ9NPQ8 531 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 FRMD3A2A2Y4 597 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 TYW5A2RUC4 315 aaKnown RBP11.52□□□□□ -0.57
TCOF1-204ENST00000427724 GAP43P17677 238 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 PAK2Q13177 524 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 PSMD2Q13200 908 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 PTPROQ16827 1216 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 GJC2Q5T442 439 aaPredicted RBP11.52□□□□□ -0.57
TCOF1-204ENST00000427724 EFCAB13Q8IY85 973 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 TUBGCP2Q9BSJ2 902 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 TSGA10Q9BZW7 698 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 LRRC4Q9HBW1 653 aa11.52□□□□□ -0.57
TCOF1-204ENST00000427724 FBXO2Q9UK22 296 aaPredicted RBP11.52□□□□□ -0.57
TCOF1-204ENST00000427724 PLA2G4AP47712 749 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 OR1G1P47890 313 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 CCL23P55773 120 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 CYP27A1Q02318 531 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 B4GALNT4Q76KP1 1039 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 THEM5Q8N1Q8 247 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 SLC17A8Q8NDX2 589 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 SH3TC2Q8TF17 1288 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 NSMCE1Q8WV22 266 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 MTA3Q9BTC8 594 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 SH3GLB2Q9NR46 395 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 A0A1B0GUA9 196 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 FZD9O00144 591 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 MAGEB2O15479 319 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 ATP1A2P50993 1020 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 KRT17Q04695 432 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 KIAA0753Q2KHM9 967 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 TLK2Q86UE8 772 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 DYDC1Q8WWB3 177 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.51□□□□□ -0.57
TCOF1-204ENST00000427724 BAZ2BQ9UIF8 2168 aaKnown RBP11.51□□□□□ -0.57
TCOF1-204ENST00000427724 ADGRG1Q9Y653 693 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 STK36Q9NRP7 1315 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 TRIM49BA6NDI0 452 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 SPOPO43791 374 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 EFCAB12Q6NXP0 572 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 HOMEZQ8IX15 550 aa11.51□□□□□ -0.57
TCOF1-204ENST00000427724 A0A087WUV0 522 aaPredicted RBP11.5□□□□□ -0.57
TCOF1-204ENST00000427724 SPDYE5A6NIY4 337 aa11.5□□□□□ -0.57
TCOF1-204ENST00000427724 MSCO60682 206 aa11.5□□□□□ -0.57
TCOF1-204ENST00000427724 ADCYAP1R1P41586 468 aa11.5□□□□□ -0.57
TCOF1-204ENST00000427724 USP11P51784 963 aa11.5□□□□□ -0.57
TCOF1-204ENST00000427724 ACVR2BQ13705 512 aa11.5□□□□□ -0.57
TCOF1-204ENST00000427724 RPAINQ86UA6 219 aa11.5□□□□□ -0.57
TCOF1-204ENST00000427724 REM2Q8IYK8 340 aaPredicted RBP11.5□□□□□ -0.57
TCOF1-204ENST00000427724 SELENOOQ9BVL4 669 aa11.5□□□□□ -0.57
TCOF1-204ENST00000427724 MAGED2Q9UNF1 606 aaPredicted RBP11.5□□□□□ -0.57
TCOF1-204ENST00000427724 PCDHB7Q9Y5E2 793 aa11.5□□□□□ -0.57
TCOF1-204ENST00000427724 H3BRB1 525 aa11.5□□□□□ -0.57
TCOF1-204ENST00000427724 HUS1O60921 280 aa11.5□□□□□ -0.57
TCOF1-204ENST00000427724 USP2O75604 605 aaPredicted RBP11.5□□□□□ -0.57
TCOF1-204ENST00000427724 EGFRP00533 1210 aa11.5□□□□□ -0.57
TCOF1-204ENST00000427724 ALDH7A1P49419 539 aaKnown RBP11.5□□□□□ -0.57
TCOF1-204ENST00000427724 CASP8Q14790 479 aa11.5□□□□□ -0.57
TCOF1-204ENST00000427724 GSTA5Q7RTV2 222 aa11.5□□□□□ -0.57
TCOF1-204ENST00000427724 LRRN4CLQ8ND94 238 aa11.5□□□□□ -0.57
TCOF1-204ENST00000427724 SEPT8Q92599 483 aa11.5□□□□□ -0.57
TCOF1-204ENST00000427724 TINF2Q9BSI4 451 aa11.5□□□□□ -0.57
TCOF1-204ENST00000427724 TUT1Q9H6E5 874 aaKnown RBP11.5□□□□□ -0.57
TCOF1-204ENST00000427724 TMEM206Q9H813 350 aa11.5□□□□□ -0.57
TCOF1-204ENST00000427724 KCNH7Q9NS40 1196 aa11.5□□□□□ -0.57
TCOF1-204ENST00000427724 ZMYND8Q9ULU4 1186 aaPredicted RBP11.5□□□□□ -0.57
TCOF1-204ENST00000427724 ZNF233A6NK53 670 aa11.5□□□□□ -0.57
TCOF1-204ENST00000427724 HBP1O60381 514 aa11.5□□□□□ -0.57
TCOF1-204ENST00000427724 NDUFA10O95299 355 aa11.5□□□□□ -0.57
TCOF1-204ENST00000427724 OATP04181 439 aa11.5□□□□□ -0.57
TCOF1-204ENST00000427724 STAG3L1P0CL83 205 aa11.5□□□□□ -0.57
TCOF1-204ENST00000427724 SARNPP82979 210 aaKnown RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms