RNA–Protein interactions for RNA: ENST00000426248.7

PKP4-205, Transcript of plakophilin 4, humanhuman

TSL 1 (best)

Gene PKP4, Length 4,134 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-205ENST00000426248 CUL4BQ13620 913 aa17.3■□□□□ 0.36
PKP4-205ENST00000426248 TRIM14Q14142 442 aa17.3■□□□□ 0.36
PKP4-205ENST00000426248 SLC30A10Q6XR72 485 aa17.3■□□□□ 0.36
PKP4-205ENST00000426248 KDM7AQ6ZMT4 941 aa17.3■□□□□ 0.36
PKP4-205ENST00000426248 TRIM31Q9BZY9 425 aa17.3■□□□□ 0.36
PKP4-205ENST00000426248 RPN1P04843 607 aaKnown RBP17.3■□□□□ 0.36
PKP4-205ENST00000426248 ZNF280AP59817 542 aaPredicted RBP17.3■□□□□ 0.36
PKP4-205ENST00000426248 NELFCDQ8IXH7 590 aa17.3■□□□□ 0.36
PKP4-205ENST00000426248 B4GALNT2Q8NHY0 566 aa17.3■□□□□ 0.36
PKP4-205ENST00000426248 TSG101Q99816 390 aa17.3■□□□□ 0.36
PKP4-205ENST00000426248 HOXC10Q9NYD6 342 aa17.3■□□□□ 0.36
PKP4-205ENST00000426248 CACNA1SQ13698 1873 aa17.29■□□□□ 0.36
PKP4-205ENST00000426248 YBX3P16989 372 aaKnown RBP eCLIP17.29■□□□□ 0.362e-7■□□□□ 9.5
PKP4-205ENST00000426248 SKOR1P84550 965 aa17.29■□□□□ 0.36
PKP4-205ENST00000426248 USP4Q13107 963 aa17.29■□□□□ 0.36
PKP4-205ENST00000426248 MORC3Q14149 939 aa17.29■□□□□ 0.36
PKP4-205ENST00000426248 NLRX1Q86UT6 975 aa17.29■□□□□ 0.36
PKP4-205ENST00000426248 GPBP1Q86WP2 473 aa17.29■□□□□ 0.36
PKP4-205ENST00000426248 ITFG2Q969R8 447 aa17.29■□□□□ 0.36
PKP4-205ENST00000426248 AK8Q96MA6 479 aa17.29■□□□□ 0.36
PKP4-205ENST00000426248 C15orf41Q9Y2V0 281 aa17.29■□□□□ 0.36
PKP4-205ENST00000426248 IVNS1ABPQ9Y6Y0 642 aa17.29■□□□□ 0.36
PKP4-205ENST00000426248 ZNF831Q5JPB2 1677 aa17.29■□□□□ 0.36
PKP4-205ENST00000426248 GTPBP6O43824 516 aaPredicted RBP17.29■□□□□ 0.36
PKP4-205ENST00000426248 PAPOLAP51003 745 aaKnown RBP17.29■□□□□ 0.36
PKP4-205ENST00000426248 MMRN2Q9H8L6 949 aa17.29■□□□□ 0.36
PKP4-205ENST00000426248 ESYT2A0FGR8 921 aa17.29■□□□□ 0.36
PKP4-205ENST00000426248 HMGB1P1B2RPK0 211 aaPredicted RBP17.29■□□□□ 0.36
PKP4-205ENST00000426248 FAM13AO94988 1023 aa17.29■□□□□ 0.36
PKP4-205ENST00000426248 TCERG1LQ5VWI1 586 aa17.29■□□□□ 0.36
PKP4-205ENST00000426248 NELFBQ8WX92 580 aa17.29■□□□□ 0.36
PKP4-205ENST00000426248 LARP4BQ92615 738 aaKnown RBP17.29■□□□□ 0.36
PKP4-205ENST00000426248 LACRTQ9GZZ8 138 aa17.29■□□□□ 0.36
PKP4-205ENST00000426248 CCDC88AQ3V6T2 1871 aa17.29■□□□□ 0.36
PKP4-205ENST00000426248 DUOX1Q9NRD9 1551 aa17.29■□□□□ 0.36
PKP4-205ENST00000426248 IGKV6D-41A0A0C4DH26 115 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 MIER3Q7Z3K6 550 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 OSBPL9Q96SU4 736 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 HYOU1Q9Y4L1 999 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 PAK1Q13153 545 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 SYCP3Q8IZU3 236 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 MTMR14Q8NCE2 650 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 MS4A14Q96JA4 679 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 OSBPL7Q9BZF2 842 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 COL24A1Q17RW2 1714 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 PPP1R11O60927 126 aaPredicted RBP17.28■□□□□ 0.36
PKP4-205ENST00000426248 FAM153BP0C7A2 387 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 SETSIPP0DME0 302 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 BAATQ14032 418 aaPredicted RBP17.28■□□□□ 0.36
PKP4-205ENST00000426248 C11orf91Q3C1V1 193 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 FAM153CQ494X1 144 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 YTHDF3Q7Z739 585 aaKnown RBP17.28■□□□□ 0.36
PKP4-205ENST00000426248 KIF2BQ8N4N8 673 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 ELAC2Q9BQ52 826 aaKnown RBP17.28■□□□□ 0.36
PKP4-205ENST00000426248 NT5C3AQ9H0P0 336 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 FAM153AQ9UHL3 310 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 NFIBO00712 420 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 PTPRAP18433 802 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 ARID5AQ03989 594 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 CFAP221Q4G0U5 840 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 CCDC65Q8IXS2 484 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 PROCA1Q8NCQ7 364 aaPredicted RBP17.28■□□□□ 0.36
PKP4-205ENST00000426248 FBF1Q8TES7 1133 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 KLHL29Q96CT2 875 aa17.28■□□□□ 0.36
PKP4-205ENST00000426248 CHD4Q14839 1912 aa17.27■□□□□ 0.36
PKP4-205ENST00000426248 ELF3P78545 371 aaPredicted RBP17.27■□□□□ 0.36
PKP4-205ENST00000426248 CTTNQ14247 550 aaKnown RBP17.27■□□□□ 0.36
PKP4-205ENST00000426248 RUFY4Q6ZNE9 571 aa17.27■□□□□ 0.36
PKP4-205ENST00000426248 SEPT14Q6ZU15 432 aa17.27■□□□□ 0.36
PKP4-205ENST00000426248 TRIML1Q8N9V2 468 aa17.27■□□□□ 0.36
PKP4-205ENST00000426248 LAMB2P55268 1798 aa17.27■□□□□ 0.36
PKP4-205ENST00000426248 POTEB3A0JP26 581 aa17.27■□□□□ 0.36
PKP4-205ENST00000426248 ARHGEF35A5YM69 484 aa17.27■□□□□ 0.36
PKP4-205ENST00000426248 POTECB2RU33 542 aa17.27■□□□□ 0.36
PKP4-205ENST00000426248 RNF225M0QZC1 329 aaPredicted RBP17.27■□□□□ 0.36
PKP4-205ENST00000426248 LUC7L3O95232 432 aaKnown RBP17.27■□□□□ 0.36
PKP4-205ENST00000426248 POTEBQ6S5H4 581 aa17.27■□□□□ 0.36
PKP4-205ENST00000426248 DAGLBQ8NCG7 672 aa17.27■□□□□ 0.36
PKP4-205ENST00000426248 SESN3P58005 492 aa17.27■□□□□ 0.35
PKP4-205ENST00000426248 LRRC41Q15345 812 aa17.27■□□□□ 0.35
PKP4-205ENST00000426248 QPCTQ16769 361 aa17.27■□□□□ 0.35
PKP4-205ENST00000426248 SIAH1Q8IUQ4 282 aa17.27■□□□□ 0.35
PKP4-205ENST00000426248 ANKRD13AQ8IZ07 590 aa17.27■□□□□ 0.35
PKP4-205ENST00000426248 CYP2W1Q8TAV3 490 aa17.27■□□□□ 0.35
PKP4-205ENST00000426248 PIGOQ8TEQ8 1089 aa17.27■□□□□ 0.35
PKP4-205ENST00000426248 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.27■□□□□ 0.35
PKP4-205ENST00000426248 NUP58Q9BVL2 599 aa17.27■□□□□ 0.35
PKP4-205ENST00000426248 GDAQ9Y2T3 454 aa17.27■□□□□ 0.35
PKP4-205ENST00000426248 TBC1D12O60347 775 aa17.26■□□□□ 0.35
PKP4-205ENST00000426248 HIP1RO75146 1068 aa17.26■□□□□ 0.35
PKP4-205ENST00000426248 SNHG28P0DPA3 235 aa17.26■□□□□ 0.35
PKP4-205ENST00000426248 MAGOHP61326 146 aaKnown RBP17.26■□□□□ 0.35
PKP4-205ENST00000426248 MAGOHBQ96A72 148 aaKnown RBP17.26■□□□□ 0.35
PKP4-205ENST00000426248 SHISA4Q96DD7 197 aa17.26■□□□□ 0.35
PKP4-205ENST00000426248 TEKT3Q9BXF9 490 aa17.26■□□□□ 0.35
PKP4-205ENST00000426248 KIAA1683Q9H0B3 1180 aa17.26■□□□□ 0.35
PKP4-205ENST00000426248 NHEJ1Q9H9Q4 299 aaPredicted RBP17.26■□□□□ 0.35
PKP4-205ENST00000426248 RBM12Q9NTZ6 932 aaKnown RBP17.26■□□□□ 0.35
PKP4-205ENST00000426248 CNTNAP1P78357 1384 aa17.26■□□□□ 0.35
PKP4-205ENST00000426248 C19orf81C9J6K1 198 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms