RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 BBOX1O75936 387 aa11.95□□□□□ -0.5
LIMS1-207ENST00000422797 ACTN1P12814 892 aa11.95□□□□□ -0.5
LIMS1-207ENST00000422797 AKR1B1P15121 316 aa11.95□□□□□ -0.5
LIMS1-207ENST00000422797 DRD4P21917 467 aa11.95□□□□□ -0.5
LIMS1-207ENST00000422797 GALCP54803 685 aa11.95□□□□□ -0.5
LIMS1-207ENST00000422797 RNASE9P60153 205 aaKnown RBP11.95□□□□□ -0.5
LIMS1-207ENST00000422797 MAGOHP61326 146 aaKnown RBP11.95□□□□□ -0.5
LIMS1-207ENST00000422797 PPATQ06203 517 aa11.95□□□□□ -0.5
LIMS1-207ENST00000422797 GRIK5Q16478 980 aa11.95□□□□□ -0.5
LIMS1-207ENST00000422797 DCAF17Q5H9S7 520 aaPredicted RBP11.95□□□□□ -0.5
LIMS1-207ENST00000422797 TAOK1Q7L7X3 1001 aa11.95□□□□□ -0.5
LIMS1-207ENST00000422797 CNBD1Q8NA66 436 aa11.95□□□□□ -0.5
LIMS1-207ENST00000422797 RBM46Q8TBY0 533 aaKnown RBP11.95□□□□□ -0.5
LIMS1-207ENST00000422797 MAGOHBQ96A72 148 aaKnown RBP11.95□□□□□ -0.5
LIMS1-207ENST00000422797 REEP2Q9BRK0 252 aa11.95□□□□□ -0.5
LIMS1-207ENST00000422797 FGFBP2Q9BYJ0 223 aa11.95□□□□□ -0.5
LIMS1-207ENST00000422797 ZHX3Q9H4I2 956 aa11.95□□□□□ -0.5
LIMS1-207ENST00000422797 BCCIPQ9P287 314 aaKnown RBP eCLIP11.95□□□□□ -0.5
LIMS1-207ENST00000422797 AMACRQ9UHK6 382 aa11.95□□□□□ -0.5
LIMS1-207ENST00000422797 DAGLAQ9Y4D2 1042 aa11.95□□□□□ -0.5
LIMS1-207ENST00000422797 ASTN1O14525 1302 aa11.95□□□□□ -0.5
LIMS1-207ENST00000422797 GNPATO15228 680 aa11.94□□□□□ -0.5
LIMS1-207ENST00000422797 PPP1R11O60927 126 aaPredicted RBP11.94□□□□□ -0.5
LIMS1-207ENST00000422797 AKAP3O75969 853 aa11.94□□□□□ -0.5
LIMS1-207ENST00000422797 FGGP02679 453 aa11.94□□□□□ -0.5
LIMS1-207ENST00000422797 ATP5DP30049 168 aa11.94□□□□□ -0.5
LIMS1-207ENST00000422797 CIITAP33076 1130 aa11.94□□□□□ -0.5
LIMS1-207ENST00000422797 NF2P35240 595 aa11.94□□□□□ -0.5
LIMS1-207ENST00000422797 MMP13P45452 471 aa11.94□□□□□ -0.5
LIMS1-207ENST00000422797 SCTRP47872 440 aa11.94□□□□□ -0.5
LIMS1-207ENST00000422797 PMS2P54278 862 aa11.94□□□□□ -0.5
LIMS1-207ENST00000422797 GPSM2P81274 684 aa11.94□□□□□ -0.5
LIMS1-207ENST00000422797 ARHGAP4P98171 946 aa11.94□□□□□ -0.5
LIMS1-207ENST00000422797 SPIRE1Q08AE8 756 aa11.94□□□□□ -0.5
LIMS1-207ENST00000422797 ENOX2Q16206 610 aaKnown RBP11.94□□□□□ -0.5
LIMS1-207ENST00000422797 TCERG1LQ5VWI1 586 aa11.94□□□□□ -0.5
LIMS1-207ENST00000422797 CYB5D1Q6P9G0 228 aa11.94□□□□□ -0.5
LIMS1-207ENST00000422797 HS2ST1Q7LGA3 356 aa11.94□□□□□ -0.5
LIMS1-207ENST00000422797 FAM186BQ8IYM0 893 aa11.94□□□□□ -0.5
LIMS1-207ENST00000422797 PLCD3Q8N3E9 789 aa11.94□□□□□ -0.5
LIMS1-207ENST00000422797 CRYGNQ8WXF5 182 aa11.94□□□□□ -0.5
LIMS1-207ENST00000422797 ZKSCAN4Q969J2 545 aaPredicted RBP11.94□□□□□ -0.5
LIMS1-207ENST00000422797 MKL1Q969V6 931 aa11.94□□□□□ -0.5
LIMS1-207ENST00000422797 ROPN1BQ9BZX4 212 aaPredicted RBP11.94□□□□□ -0.5
LIMS1-207ENST00000422797 NEUROG2Q9H2A3 272 aa11.94□□□□□ -0.5
LIMS1-207ENST00000422797 CXorf56Q9H5V9 222 aa11.94□□□□□ -0.5
LIMS1-207ENST00000422797 ROPN1Q9HAT0 212 aaPredicted RBP11.94□□□□□ -0.5
LIMS1-207ENST00000422797 TUFT1Q9NNX1 390 aa11.94□□□□□ -0.5
LIMS1-207ENST00000422797 SAMD15Q9P1V8 674 aa11.94□□□□□ -0.5
LIMS1-207ENST00000422797 SRP68Q9UHB9 627 aaKnown RBP11.94□□□□□ -0.5
LIMS1-207ENST00000422797 ARFGEF1Q9Y6D6 1849 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 FRMPD4Q14CM0 1322 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 A0A1B0GUA9 196 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 POTEFA5A3E0 1075 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 CCT8L1PA6NM43 557 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 P4HA2O15460 535 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 DDX3YO15523 660 aaKnown RBP11.93□□□□□ -0.5
LIMS1-207ENST00000422797 EVI5O60447 810 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 PHF2O75151 1096 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 CYP3A4P08684 503 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 POTEIP0CG38 1075 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 ERCC3P19447 782 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 SREBF1P36956 1147 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 MMP14P50281 582 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 MAPK7Q13164 816 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 RIPK1Q13546 671 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 PLS1Q14651 629 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 KIF22Q14807 665 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 TRADDQ15628 312 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 CRY2Q49AN0 593 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 KIAA1755Q5JYT7 1200 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 MSL1Q68DK7 614 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 POTEGQ6S5H5 508 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 POTEEQ6S8J3 1075 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 CRELD2Q6UXH1 353 aaPredicted RBP11.93□□□□□ -0.5
LIMS1-207ENST00000422797 CATSPER3Q86XQ3 398 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 FUKQ8N0W3 1084 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 GBP7Q8N8V2 638 aaPredicted RBP11.93□□□□□ -0.5
LIMS1-207ENST00000422797 ATP8B4Q8TF62 1192 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 CCT6BQ92526 530 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 HVCN1Q96D96 273 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 BORCS6Q96GS4 357 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 RPS6KC1Q96S38 1066 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 SYT11Q9BT88 431 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 ZDHHC18Q9NUE0 388 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 NYAP2Q9P242 653 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 PCYOX1Q9UHG3 505 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 MCM8Q9UJA3 840 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 SYNPO2Q9UMS6 1093 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 FRMD4BQ9Y2L6 1034 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 RABGAP1Q9Y3P9 1069 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 PCDHA1Q9Y5I3 950 aa11.93□□□□□ -0.5
LIMS1-207ENST00000422797 MYH4Q9Y623 1939 aa11.92□□□□□ -0.5
LIMS1-207ENST00000422797 NPHP3-ACAD11A0A0J9YXS1 232 aa11.92□□□□□ -0.5
LIMS1-207ENST00000422797 SPDYE3A6NKU9 549 aa11.92□□□□□ -0.5
LIMS1-207ENST00000422797 USP17L10C9JJH3 530 aa11.92□□□□□ -0.5
LIMS1-207ENST00000422797 RGS16O15492 202 aaPredicted RBP11.92□□□□□ -0.5
LIMS1-207ENST00000422797 BUB1BO60566 1050 aaPredicted RBP11.92□□□□□ -0.5
LIMS1-207ENST00000422797 FAM13AO94988 1023 aa11.92□□□□□ -0.5
LIMS1-207ENST00000422797 GCNT3O95395 438 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms