RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 PDCD1Q15116 288 aa6.09□□□□□ -1.43
VPS54-204ENST00000416400 CLUL1Q15846 466 aa6.09□□□□□ -1.43
VPS54-204ENST00000416400 C14orf80Q86SX3 495 aa6.09□□□□□ -1.43
VPS54-204ENST00000416400 FAM124AQ86V42 546 aa6.09□□□□□ -1.43
VPS54-204ENST00000416400 SP8Q8IXZ3 490 aa6.09□□□□□ -1.43
VPS54-204ENST00000416400 CPA6Q8N4T0 437 aa6.09□□□□□ -1.43
VPS54-204ENST00000416400 TUBGCP5Q96RT8 1024 aa6.09□□□□□ -1.43
VPS54-204ENST00000416400 TMEM168Q9H0V1 697 aa6.09□□□□□ -1.43
VPS54-204ENST00000416400 TCF7L1Q9HCS4 588 aa6.09□□□□□ -1.43
VPS54-204ENST00000416400 CCM2LQ9NUG4 571 aaPredicted RBP6.09□□□□□ -1.43
VPS54-204ENST00000416400 WASF3Q9UPY6 502 aa6.09□□□□□ -1.43
VPS54-204ENST00000416400 GOLGA6CA6NDK9 693 aa6.08□□□□□ -1.44
VPS54-204ENST00000416400 GOLGA6BA6NDN3 693 aa6.08□□□□□ -1.44
VPS54-204ENST00000416400 SASH1O94885 1247 aa6.08□□□□□ -1.44
VPS54-204ENST00000416400 GOLGA6DP0CG33 693 aa6.08□□□□□ -1.44
VPS54-204ENST00000416400 U2AF1L5P0DN76 240 aaPredicted RBP6.08□□□□□ -1.44
VPS54-204ENST00000416400 PF4V1P10720 104 aa6.08□□□□□ -1.44
VPS54-204ENST00000416400 ECE1P42892 770 aa6.08□□□□□ -1.44
VPS54-204ENST00000416400 KCNC1P48547 511 aa6.08□□□□□ -1.44
VPS54-204ENST00000416400 U2AF1Q01081 240 aaKnown RBP eCLIP6.08□□□□□ -1.447e-6■■■□□ 18.7
VPS54-204ENST00000416400 ROM1Q03395 351 aa6.08□□□□□ -1.44
VPS54-204ENST00000416400 KRTAP19-4Q3LI73 84 aa6.08□□□□□ -1.44
VPS54-204ENST00000416400 VWA3BQ502W6 1294 aa6.08□□□□□ -1.44
VPS54-204ENST00000416400 TTC38Q5R3I4 469 aa6.08□□□□□ -1.44
VPS54-204ENST00000416400 CXorf57Q6NSI4 855 aaKnown RBP6.08□□□□□ -1.44
VPS54-204ENST00000416400 ESPNLQ6ZVH7 1005 aa6.08□□□□□ -1.44
VPS54-204ENST00000416400 CXorf67Q86X51 503 aaPredicted RBP6.08□□□□□ -1.44
VPS54-204ENST00000416400 PHYKPLQ8IUZ5 450 aa6.08□□□□□ -1.44
VPS54-204ENST00000416400 MAGEB6Q8N7X4 407 aa6.08□□□□□ -1.44
VPS54-204ENST00000416400 TGFBRAP1Q8WUH2 860 aa6.08□□□□□ -1.44
VPS54-204ENST00000416400 BTBD2Q9BX70 525 aa6.08□□□□□ -1.44
VPS54-204ENST00000416400 KRTAP4-2Q9BYR5 136 aa6.08□□□□□ -1.44
VPS54-204ENST00000416400 GOLGA6AQ9NYA3 693 aa6.08□□□□□ -1.44
VPS54-204ENST00000416400 BTBD7Q9P203 1132 aa6.08□□□□□ -1.44
VPS54-204ENST00000416400 KCNG1Q9UIX4 513 aa6.08□□□□□ -1.44
VPS54-204ENST00000416400 INVSQ9Y283 1065 aa6.08□□□□□ -1.44
VPS54-204ENST00000416400 ANKRD6Q9Y2G4 727 aa6.08□□□□□ -1.44
VPS54-204ENST00000416400 GIT1Q9Y2X7 761 aa6.08□□□□□ -1.44
VPS54-204ENST00000416400 A0A1B0GTL3 188 aa6.07□□□□□ -1.44
VPS54-204ENST00000416400 KLHL33A6NCF5 533 aa6.07□□□□□ -1.44
VPS54-204ENST00000416400 APEX1P27695 318 aaKnown RBP6.07□□□□□ -1.44
VPS54-204ENST00000416400 SLURP1P55000 103 aa6.07□□□□□ -1.44
VPS54-204ENST00000416400 MLLT6P55198 1093 aaPredicted RBP6.07□□□□□ -1.44
VPS54-204ENST00000416400 GJA9P57773 515 aa6.07□□□□□ -1.44
VPS54-204ENST00000416400 SLC6A3Q01959 620 aa6.07□□□□□ -1.44
VPS54-204ENST00000416400 MAP3K12Q12852 859 aa6.07□□□□□ -1.44
VPS54-204ENST00000416400 ACAP2Q15057 778 aa6.07□□□□□ -1.44
VPS54-204ENST00000416400 FSCN1Q16658 493 aaKnown RBP6.07□□□□□ -1.44
VPS54-204ENST00000416400 GFOD2Q3B7J2 385 aa6.07□□□□□ -1.44
VPS54-204ENST00000416400 PRAMEF9Q5VWM5 478 aa6.07□□□□□ -1.44
VPS54-204ENST00000416400 MCTP2Q6DN12 878 aa6.07□□□□□ -1.44
VPS54-204ENST00000416400 CCSAPQ6IQ19 270 aaPredicted RBP6.07□□□□□ -1.44
VPS54-204ENST00000416400 CXXC5Q7LFL8 322 aaKnown RBP6.07□□□□□ -1.44
VPS54-204ENST00000416400 CILP2Q8IUL8 1156 aa6.07□□□□□ -1.44
VPS54-204ENST00000416400 SIAH1Q8IUQ4 282 aa6.07□□□□□ -1.44
VPS54-204ENST00000416400 CCAR1Q8IX12 1150 aaKnown RBP6.07□□□□□ -1.44
VPS54-204ENST00000416400 ADGRG2Q8IZP9 1017 aa6.07□□□□□ -1.44
VPS54-204ENST00000416400 TTC8Q8TAM2 541 aa6.07□□□□□ -1.44
VPS54-204ENST00000416400 FERMT2Q96AC1 680 aa6.07□□□□□ -1.44
VPS54-204ENST00000416400 ZNF496Q96IT1 587 aaPredicted RBP6.07□□□□□ -1.44
VPS54-204ENST00000416400 ORAI2Q96SN7 254 aa6.07□□□□□ -1.44
VPS54-204ENST00000416400 FOXB1Q99853 325 aa6.07□□□□□ -1.44
VPS54-204ENST00000416400 OR10A5Q9H207 317 aa6.07□□□□□ -1.44
VPS54-204ENST00000416400 BARX1Q9HBU1 254 aaPredicted RBP6.07□□□□□ -1.44
VPS54-204ENST00000416400 KCND1Q9NSA2 647 aa6.07□□□□□ -1.44
VPS54-204ENST00000416400 USP40Q9NVE5 1235 aa6.07□□□□□ -1.44
VPS54-204ENST00000416400 SLC52A1Q9NWF4 448 aa6.07□□□□□ -1.44
VPS54-204ENST00000416400 DNAJC28Q9NX36 388 aa6.07□□□□□ -1.44
VPS54-204ENST00000416400 FBXO10Q9UK96 956 aa6.07□□□□□ -1.44
VPS54-204ENST00000416400 PNMA8BQ9ULN7 279 aaPredicted RBP6.07□□□□□ -1.44
VPS54-204ENST00000416400 PRPF3O43395 683 aaKnown RBP6.06□□□□□ -1.44
VPS54-204ENST00000416400 PCDHGA12O60330 932 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 APOL3O95236 402 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 ZNF28P17035 718 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 BMP7P18075 431 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 VCAM1P19320 739 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 ENPP1P22413 925 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 GNALP38405 381 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 ALDH6A1Q02252 535 aaKnown RBP6.06□□□□□ -1.44
VPS54-204ENST00000416400 KIAA2012Q0VF49 1180 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 TCIRG1Q13488 830 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 ODF1Q14990 250 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 FAM26FQ5R3K3 315 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 EFCAB2Q5VUJ9 269 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 SLFN12LQ6IEE8 588 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 OTOP2Q7RTS6 562 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 RTN4RL1Q86UN2 441 aaPredicted RBP6.06□□□□□ -1.44
VPS54-204ENST00000416400 CMTR2Q8IYT2 770 aaKnown RBP6.06□□□□□ -1.44
VPS54-204ENST00000416400 IFNL2Q8IZJ0 200 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 ADAMTS17Q8TE56 1095 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 RPGRQ92834 1020 aaKnown RBP6.06□□□□□ -1.44
VPS54-204ENST00000416400 MAML3Q96JK9 1138 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 LCORQ96JN0 433 aaPredicted RBP6.06□□□□□ -1.44
VPS54-204ENST00000416400 SPATA25Q9BR10 227 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 KRTAP4-9Q9BYQ8 210 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 POFUT1Q9H488 388 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 PCDHGA9Q9Y5G4 932 aaKnown RBP6.06□□□□□ -1.44
VPS54-204ENST00000416400 PCDHGA8Q9Y5G5 932 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 PCDHGA7Q9Y5G6 932 aa6.06□□□□□ -1.44
VPS54-204ENST00000416400 PCDHGA6Q9Y5G7 932 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms