RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 CXorf57Q6NSI4 855 aaKnown RBP3.07□□□□□ -1.92
MCF2-204ENST00000414978 FDX2Q6P4F2 183 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 GALNT5Q7Z7M9 940 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 CLASRPQ8N2M8 674 aaKnown RBP3.07□□□□□ -1.92
MCF2-204ENST00000414978 PDILTQ8N807 584 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 C1orf162Q8NEQ5 155 aaPredicted RBP3.07□□□□□ -1.92
MCF2-204ENST00000414978 NLGN2Q8NFZ4 835 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 KREMEN1Q96MU8 473 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 TAAR9Q96RI9 348 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 GTPBP4Q9BZE4 634 aaKnown RBP3.07□□□□□ -1.92
MCF2-204ENST00000414978 NRSN2Q9GZP1 204 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP3.07□□□□□ -1.92
MCF2-204ENST00000414978 IFT122Q9HBG6 1241 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 CNTNAP4Q9C0A0 1308 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 TJP1Q07157 1748 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 KDM3BQ7LBC6 1761 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 C2orf71A6NGG8 1288 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 PRR33A8MZF0 331 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 TPP1O14773 563 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 AREL1O15033 823 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 HOXD8P13378 290 aaPredicted RBP3.07□□□□□ -1.92
MCF2-204ENST00000414978 MECP2P51608 486 aaKnown RBP3.07□□□□□ -1.92
MCF2-204ENST00000414978 USP11P51784 963 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 KLF1Q13351 362 aaPredicted RBP3.07□□□□□ -1.92
MCF2-204ENST00000414978 MBLAC2Q68D91 279 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 FAM186BQ8IYM0 893 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 CCDC33Q8N5R6 958 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 PCSK9Q8NBP7 692 aaKnown RBP3.07□□□□□ -1.92
MCF2-204ENST00000414978 ELAC2Q9BQ52 826 aaKnown RBP3.07□□□□□ -1.92
MCF2-204ENST00000414978 PDGFDQ9GZP0 370 aaPredicted RBP3.07□□□□□ -1.92
MCF2-204ENST00000414978 C14orf93Q9H972 538 aaKnown RBP3.07□□□□□ -1.92
MCF2-204ENST00000414978 GJB4Q9NTQ9 266 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 AP5S1Q9NUS5 200 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 OXSMQ9NWU1 459 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 RRN3Q9NYV6 651 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 POLG2Q9UHN1 485 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 CBLCQ9ULV8 474 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 APOBEC2Q9Y235 224 aaKnown RBP3.07□□□□□ -1.92
MCF2-204ENST00000414978 EMC9Q9Y3B6 208 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 ANKRD36BQ8N2N9 1353 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 KCPQ6ZWJ8 1503 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 KLHL33A6NCF5 533 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 TRIM75PA6NK02 468 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 GSTM1P09488 218 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 RECQLP46063 649 aaPredicted RBP3.06□□□□□ -1.92
MCF2-204ENST00000414978 MAP7Q14244 749 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 PCSK7Q16549 785 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 TIGD6Q17RP2 521 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 ARMC3Q5W041 872 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 MILR1Q7Z6M3 343 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 FBXL6Q8N531 539 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 NAT16Q8N8M0 369 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 MARCH10Q8NA82 808 aaPredicted RBP3.06□□□□□ -1.92
MCF2-204ENST00000414978 PCDH19Q8TAB3 1148 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 RSRC1Q96IZ7 334 aaKnown RBP3.06□□□□□ -1.92
MCF2-204ENST00000414978 NKX2-4Q9H2Z4 354 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 MAGED2Q9UNF1 606 aaPredicted RBP3.06□□□□□ -1.92
MCF2-204ENST00000414978 ANKRD6Q9Y2G4 727 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 SCN7AQ01118 1682 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 TRAF5O00463 557 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 DEAF1O75398 565 aaPredicted RBP3.06□□□□□ -1.92
MCF2-204ENST00000414978 PYGLP06737 847 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 APBA1Q02410 837 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 PAK1Q13153 545 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 LRRC32Q14392 662 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 NCAPD2Q15021 1401 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 KLHDC7AQ5VTJ3 777 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 SWSAP1Q6NVH7 229 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 PTRH1Q86Y79 214 aaKnown RBP3.06□□□□□ -1.92
MCF2-204ENST00000414978 ZZZ3Q8IYH5 903 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 GALNT6Q8NCL4 622 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 ACRBPQ8NEB7 543 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 FBXO18Q8NFZ0 1043 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 ABHD8Q96I13 439 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 CCDC138Q96M89 665 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 LRRC27Q9C0I9 530 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 ADAM19Q9H013 955 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 CEP72Q9P209 647 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 POLHQ9Y253 713 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 ZNF652Q9Y2D9 606 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 ANKRD31Q8N7Z5 1873 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 GFRA3O60609 400 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 SIN3BO75182 1162 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 NPTXRO95502 500 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 FAM200BP0CF97 657 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 BCL6P41182 706 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 JAM2P57087 298 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 ROR1Q01973 937 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 GRIK4Q16099 956 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 PKN2Q16513 984 aaKnown RBP3.06□□□□□ -1.92
MCF2-204ENST00000414978 INF2Q27J81 1249 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 C1orf229Q6ZS94 237 aaPredicted RBP3.06□□□□□ -1.92
MCF2-204ENST00000414978 DPF2Q92785 391 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 KIAA1191Q96A73 305 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 SGCZQ96LD1 299 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 TSPAN18Q96SJ8 248 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 FOXP3Q9BZS1 431 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 ASCC2Q9H1I8 757 aaPredicted RBP3.06□□□□□ -1.92
MCF2-204ENST00000414978 SEMA4AQ9H3S1 761 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 MARCH2Q9P0N8 246 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms