RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 AP4S1Q9Y587 144 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 KIF21AQ7Z4S6 1674 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 CCNYL1Q8N7R7 359 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 GJA10Q969M2 543 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 DNAJC7Q99615 494 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 FAM129AQ9BZQ8 928 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 MOSPD1Q9UJG1 213 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 CFAP69A5D8W1 941 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 LAD1O00515 517 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 TRADDQ15628 312 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 ODR4Q5SWX8 454 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 RMDN1Q96DB5 314 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 SARS2Q9NP81 518 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 PDZK1P1A8MUH7 402 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 NEMP1O14524 444 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 STRNO43815 780 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 MMRN1Q13201 1228 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 KLHL12Q53G59 568 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 CHURC1Q8WUH1 139 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 AS3MTQ9HBK9 375 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 FANCLQ9NW38 375 aa14.17□□□□□ -0.14
CCDC88A-204ENST00000413716 SNPHO15079 494 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 C16orf89Q6UX73 402 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 FASTKD5Q7L8L6 764 aaKnown RBP14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 DENND6AQ8IWF6 608 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 TUFT1Q9NNX1 390 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 MRGBPQ9NV56 204 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 PARP10Q53GL7 1025 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 GMEB1Q9Y692 573 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 FAM47EQ6ZV65 393 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 BLIDQ8IZY5 108 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 KLHL8Q9P2G9 620 aaPredicted RBP14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 MAD2L2Q9UI95 211 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 POU5F1BQ06416 359 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 NUP93Q8N1F7 819 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 ELMOD1Q8N336 334 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 CCDC134Q9H6E4 229 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 MRPL11Q9Y3B7 192 aaKnown RBP14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 ABCC12Q96J65 1359 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 COBLO75128 1261 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 KCNA2P16389 499 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 TTC23LQ6PF05 361 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 CCT7Q99832 543 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 GMNCA6NCL1 334 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 SERPING1P05155 500 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 PGM1P36871 562 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 COX10Q12887 443 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 NEK10Q6ZWH5 1172 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 KRT74Q7RTS7 529 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 TMC2Q8TDI7 906 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 NLRP11P59045 1033 aaKnown RBP14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 MRPS35P82673 323 aaKnown RBP14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 FAM162AQ96A26 154 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 LRRC39Q96DD0 335 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 EPS8L2Q9H6S3 715 aa14.16□□□□□ -0.14
CCDC88A-204ENST00000413716 EIF4E1BA6NMX2 242 aaKnown RBP14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 CDC40O60508 579 aaKnown RBP eCLIP14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 CNBD1Q8NA66 436 aa14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 APPBP2Q92624 585 aa14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 KLHL20Q9Y2M5 609 aa14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 ENO4A6NNW6 628 aa14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 PEX1O43933 1283 aa14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 PHKA1P46020 1223 aa14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 CSE1LP55060 971 aaKnown RBP14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 FAM45AQ8TCE6 357 aa14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 USP44Q9H0E7 712 aa14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 GGA1Q9UJY5 639 aa14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 ATAD2BQ9ULI0 1458 aa14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 BNIP3LO60238 219 aa14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 TALDO1P37837 337 aa14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 ACTN3Q08043 901 aaPredicted RBP14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 NCF4Q15080 339 aa14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 ARMC3Q5W041 872 aa14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 MEFVO15553 781 aaPredicted RBP14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 EXOSC4Q9NPD3 245 aaKnown RBP14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 ANXA1P04083 346 aa14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 TFAMQ00059 246 aaKnown RBP14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 CTDSPL2Q05D32 466 aa14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 ANO4Q32M45 955 aa14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 APOA5Q6Q788 366 aa14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 DHTKD1Q96HY7 919 aaPredicted RBP14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 PDCD6IPQ8WUM4 868 aaKnown RBP14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 IARS2Q9NSE4 1012 aaKnown RBP14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 NRBP2Q9NSY0 501 aa14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 ZMYM6O95789 1325 aa14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 TRIM24O15164 1050 aa14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 GRAMD1AQ96CP6 724 aa14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 TRIM39Q9HCM9 518 aa14.15□□□□□ -0.14
CCDC88A-204ENST00000413716 SYCP2Q9BX26 1530 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 SAC3D1A6NKF1 404 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 LRRIQ3A6PVS8 624 aaPredicted RBP14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 SORBS3O60504 671 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 THEMIS2Q5TEJ8 643 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 SCFD1Q8WVM8 642 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 MRPL48Q96GC5 212 aaKnown RBP14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 AP1M1Q9BXS5 423 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 CPA1P15085 419 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 CLCN6P51797 869 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 TINF2Q9BSI4 451 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 UBE2OQ9C0C9 1292 aaKnown RBP14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms