RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 RHPN2Q8IUC4 686 aa16.57■□□□□ 0.24
LIMS4-201ENST00000413601 CRIPAKQ8N1N5 446 aa16.57■□□□□ 0.24
LIMS4-201ENST00000413601 ZNF710Q8N1W2 664 aa16.57■□□□□ 0.24
LIMS4-201ENST00000413601 NLRP7Q8WX94 980 aa16.57■□□□□ 0.24
LIMS4-201ENST00000413601 ADAM2Q99965 735 aa16.57■□□□□ 0.24
LIMS4-201ENST00000413601 BMP2KQ9NSY1 1161 aaPredicted RBP16.57■□□□□ 0.24
LIMS4-201ENST00000413601 SUCLA2Q9P2R7 463 aaPredicted RBP16.57■□□□□ 0.24
LIMS4-201ENST00000413601 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.57■□□□□ 0.24
LIMS4-201ENST00000413601 PRRC2BQ5JSZ5 2229 aaKnown RBP16.56■□□□□ 0.24
LIMS4-201ENST00000413601 A0A087WWV3 80 aa16.56■□□□□ 0.24
LIMS4-201ENST00000413601 H3BQV1 296 aa16.56■□□□□ 0.24
LIMS4-201ENST00000413601 LPXNO60711 386 aa16.56■□□□□ 0.24
LIMS4-201ENST00000413601 CSDE1O75534 798 aaKnown RBP16.56■□□□□ 0.24
LIMS4-201ENST00000413601 DGKIO75912 1065 aa16.56■□□□□ 0.24
LIMS4-201ENST00000413601 DARSP14868 501 aaKnown RBP16.56■□□□□ 0.24
LIMS4-201ENST00000413601 POLGP54098 1239 aaPredicted RBP16.56■□□□□ 0.24
LIMS4-201ENST00000413601 GRB10Q13322 594 aa16.56■□□□□ 0.24
LIMS4-201ENST00000413601 NPAS4Q8IUM7 802 aa16.56■□□□□ 0.24
LIMS4-201ENST00000413601 KSR1Q8IVT5 923 aa16.56■□□□□ 0.24
LIMS4-201ENST00000413601 MICALL1Q8N3F8 863 aa16.56■□□□□ 0.24
LIMS4-201ENST00000413601 C4orf32Q8N8J7 132 aa16.56■□□□□ 0.24
LIMS4-201ENST00000413601 NEK9Q8TD19 979 aa16.56■□□□□ 0.24
LIMS4-201ENST00000413601 GDPD5Q8WTR4 605 aa16.56■□□□□ 0.24
LIMS4-201ENST00000413601 SLC7A3Q8WY07 619 aa16.56■□□□□ 0.24
LIMS4-201ENST00000413601 JPH2Q9BR39 696 aaPredicted RBP16.56■□□□□ 0.24
LIMS4-201ENST00000413601 DHX33Q9H6R0 707 aaKnown RBP16.56■□□□□ 0.24
LIMS4-201ENST00000413601 RGS18Q9NS28 235 aa16.56■□□□□ 0.24
LIMS4-201ENST00000413601 PCDHB6Q9Y5E3 794 aa16.56■□□□□ 0.24
LIMS4-201ENST00000413601 ATG2AQ2TAZ0 1938 aa16.56■□□□□ 0.24
LIMS4-201ENST00000413601 A0A087WZ62 844 aa16.55■□□□□ 0.24
LIMS4-201ENST00000413601 LYPLA2O95372 231 aa16.55■□□□□ 0.24
LIMS4-201ENST00000413601 STAG3L1P0CL83 205 aa16.55■□□□□ 0.24
LIMS4-201ENST00000413601 FGFR4P22455 802 aa16.55■□□□□ 0.24
LIMS4-201ENST00000413601 RFC5P40937 340 aa16.55■□□□□ 0.24
LIMS4-201ENST00000413601 CDC42EP1Q00587 391 aa16.55■□□□□ 0.24
LIMS4-201ENST00000413601 EXOC8Q8IYI6 725 aa16.55■□□□□ 0.24
LIMS4-201ENST00000413601 FIBCD1Q8N539 461 aa16.55■□□□□ 0.24
LIMS4-201ENST00000413601 FBXO22Q8NEZ5 403 aa16.55■□□□□ 0.24
LIMS4-201ENST00000413601 TMEM143Q96AN5 459 aa16.55■□□□□ 0.24
LIMS4-201ENST00000413601 ZNF689Q96CS4 500 aaPredicted RBP16.55■□□□□ 0.24
LIMS4-201ENST00000413601 FDXACB1Q9BRP7 624 aaPredicted RBP16.55■□□□□ 0.24
LIMS4-201ENST00000413601 RC3H2Q9HBD1 1191 aaKnown RBP16.55■□□□□ 0.24
LIMS4-201ENST00000413601 LRFN2Q9ULH4 789 aa16.55■□□□□ 0.24
LIMS4-201ENST00000413601 PPME1Q9Y570 386 aa16.55■□□□□ 0.24
LIMS4-201ENST00000413601 MTCH2Q9Y6C9 303 aa16.55■□□□□ 0.24
LIMS4-201ENST00000413601 TRANK1O15050 2925 aa16.54■□□□□ 0.24
LIMS4-201ENST00000413601 ADGRA3Q8IWK6 1321 aa16.54■□□□□ 0.24
LIMS4-201ENST00000413601 C9IYK1 514 aa16.54■□□□□ 0.24
LIMS4-201ENST00000413601 GTPBP6O43824 516 aaPredicted RBP16.54■□□□□ 0.24
LIMS4-201ENST00000413601 SPATA31C1P0DKV0 1188 aa16.54■□□□□ 0.24
LIMS4-201ENST00000413601 POU3F3P20264 500 aaPredicted RBP16.54■□□□□ 0.24
LIMS4-201ENST00000413601 SARSP49591 514 aaKnown RBP16.54■□□□□ 0.24
LIMS4-201ENST00000413601 PTGDRQ13258 359 aa16.54■□□□□ 0.24
LIMS4-201ENST00000413601 CUL4AQ13619 759 aa16.54■□□□□ 0.24
LIMS4-201ENST00000413601 BTG3Q14201 252 aaPredicted RBP16.54■□□□□ 0.24
LIMS4-201ENST00000413601 DSC3Q14574 896 aa16.54■□□□□ 0.24
LIMS4-201ENST00000413601 EMC2Q15006 297 aa16.54■□□□□ 0.24
LIMS4-201ENST00000413601 EPC2Q52LR7 807 aa16.54■□□□□ 0.24
LIMS4-201ENST00000413601 LARP1BQ659C4 914 aaKnown RBP16.54■□□□□ 0.24
LIMS4-201ENST00000413601 FAM43BQ6ZT52 329 aaPredicted RBP16.54■□□□□ 0.24
LIMS4-201ENST00000413601 SLC24A5Q71RS6 500 aa16.54■□□□□ 0.24
LIMS4-201ENST00000413601 TMEM192Q8IY95 271 aa16.54■□□□□ 0.24
LIMS4-201ENST00000413601 PIGOQ8TEQ8 1089 aa16.54■□□□□ 0.24
LIMS4-201ENST00000413601 PRPF31Q8WWY3 499 aaKnown RBP16.54■□□□□ 0.24
LIMS4-201ENST00000413601 NLRP4Q96MN2 994 aa16.54■□□□□ 0.24
LIMS4-201ENST00000413601 GCOM2Q9BZD3 368 aaPredicted RBP16.54■□□□□ 0.24
LIMS4-201ENST00000413601 C1orf112Q9NSG2 853 aa16.54■□□□□ 0.24
LIMS4-201ENST00000413601 ANKEF1Q9NU02 776 aa16.54■□□□□ 0.24
LIMS4-201ENST00000413601 PCDHB7Q9Y5E2 793 aa16.54■□□□□ 0.24
LIMS4-201ENST00000413601 MED24O75448 989 aa16.53■□□□□ 0.24
LIMS4-201ENST00000413601 GATMP50440 423 aa16.53■□□□□ 0.24
LIMS4-201ENST00000413601 PAN2Q504Q3 1202 aaKnown RBP16.53■□□□□ 0.24
LIMS4-201ENST00000413601 ZNF410Q86VK4 478 aa16.53■□□□□ 0.24
LIMS4-201ENST00000413601 CATSPER3Q86XQ3 398 aa16.53■□□□□ 0.24
LIMS4-201ENST00000413601 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.53■□□□□ 0.24
LIMS4-201ENST00000413601 TUFT1Q9NNX1 390 aa16.53■□□□□ 0.24
LIMS4-201ENST00000413601 PRDM6Q9NQX0 595 aa16.53■□□□□ 0.24
LIMS4-201ENST00000413601 COL4A3BPQ9Y5P4 624 aa16.53■□□□□ 0.24
LIMS4-201ENST00000413601 PLXNA4Q9HCM2 1894 aa16.52■□□□□ 0.24
LIMS4-201ENST00000413601 SRGAP2CP0DJJ0 459 aa16.52■□□□□ 0.24
LIMS4-201ENST00000413601 ZSCAN20P17040 1043 aaPredicted RBP16.52■□□□□ 0.24
LIMS4-201ENST00000413601 FAM189BP81408 668 aa16.52■□□□□ 0.24
LIMS4-201ENST00000413601 LAMTOR4Q0VGL1 99 aa16.52■□□□□ 0.24
LIMS4-201ENST00000413601 ERMNQ8TAM6 284 aa16.52■□□□□ 0.24
LIMS4-201ENST00000413601 TCP11Q8WWU5 503 aa16.52■□□□□ 0.24
LIMS4-201ENST00000413601 PSPC1Q8WXF1 523 aaKnown RBP16.52■□□□□ 0.24
LIMS4-201ENST00000413601 CCDC43Q96MW1 224 aaKnown RBP16.52■□□□□ 0.24
LIMS4-201ENST00000413601 SAMD11Q96NU1 681 aa16.52■□□□□ 0.24
LIMS4-201ENST00000413601 MTRQ99707 1265 aa16.52■□□□□ 0.24
LIMS4-201ENST00000413601 POLR3CQ9BUI4 534 aaPredicted RBP16.52■□□□□ 0.24
LIMS4-201ENST00000413601 IFT122Q9HBG6 1241 aa16.52■□□□□ 0.24
LIMS4-201ENST00000413601 XPNPEP1Q9NQW7 623 aa16.52■□□□□ 0.24
LIMS4-201ENST00000413601 GAS2O43903 313 aaKnown RBP16.51■□□□□ 0.23
LIMS4-201ENST00000413601 LINC00271P0C7V0 271 aa16.51■□□□□ 0.23
LIMS4-201ENST00000413601 XRCC6P12956 609 aaKnown RBP eCLIP16.51■□□□□ 0.23
LIMS4-201ENST00000413601 RPA1P27694 616 aa16.51■□□□□ 0.23
LIMS4-201ENST00000413601 CTNNB1P35222 781 aa16.51■□□□□ 0.23
LIMS4-201ENST00000413601 RARRES1P49788 294 aa16.51■□□□□ 0.23
LIMS4-201ENST00000413601 FXR2P51116 673 aaKnown RBP eCLIP16.51■□□□□ 0.23
LIMS4-201ENST00000413601 RILPL1Q5EBL4 403 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms