RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 KIF6Q6ZMV9 814 aa7.99□□□□□ -1.13
USP40-202ENST00000409945 SMIM5Q71RC9 77 aa7.99□□□□□ -1.13
USP40-202ENST00000409945 VSIG10LQ86VR7 867 aa7.99□□□□□ -1.13
USP40-202ENST00000409945 AMIGO3Q86WK7 504 aa7.99□□□□□ -1.13
USP40-202ENST00000409945 CCDC8Q9H0W5 538 aaPredicted RBP7.99□□□□□ -1.13
USP40-202ENST00000409945 MS4A5Q9H3V2 200 aa7.99□□□□□ -1.13
USP40-202ENST00000409945 VTA1Q9NP79 307 aa7.99□□□□□ -1.13
USP40-202ENST00000409945 MIS18AQ9NYP9 233 aa7.99□□□□□ -1.13
USP40-202ENST00000409945 SRP68Q9UHB9 627 aaKnown RBP7.99□□□□□ -1.13
USP40-202ENST00000409945 RRP7AQ9Y3A4 280 aaKnown RBP7.99□□□□□ -1.13
USP40-202ENST00000409945 KCNQ3O43525 872 aa7.98□□□□□ -1.13
USP40-202ENST00000409945 NPHS1O60500 1241 aa7.98□□□□□ -1.13
USP40-202ENST00000409945 A1BGP04217 495 aa7.98□□□□□ -1.13
USP40-202ENST00000409945 ATP2A2P16615 1042 aaKnown RBP7.98□□□□□ -1.13
USP40-202ENST00000409945 PRKCAP17252 672 aa7.98□□□□□ -1.13
USP40-202ENST00000409945 KRT15P19012 456 aa7.98□□□□□ -1.13
USP40-202ENST00000409945 YY1P25490 414 aa7.98□□□□□ -1.13
USP40-202ENST00000409945 GNAI1P63096 354 aa7.98□□□□□ -1.13
USP40-202ENST00000409945 BRDTQ58F21 947 aaPredicted RBP7.98□□□□□ -1.13
USP40-202ENST00000409945 STK11IPQ8N1F8 1099 aa7.98□□□□□ -1.13
USP40-202ENST00000409945 SMC1BQ8NDV3 1235 aa7.98□□□□□ -1.13
USP40-202ENST00000409945 PIP4K2CQ8TBX8 421 aa7.98□□□□□ -1.13
USP40-202ENST00000409945 HCFC2Q9Y5Z7 792 aa7.98□□□□□ -1.13
USP40-202ENST00000409945 C4AP0C0L4 1744 aa7.98□□□□□ -1.13
USP40-202ENST00000409945 A0A1W2PQ45 241 aaPredicted RBP7.97□□□□□ -1.13
USP40-202ENST00000409945 A0A1W2PQY0 241 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 ZNF561-AS1K7EIQ3 104 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 F2P00734 622 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 NTRK1P04629 796 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 EIF4A1P60842 406 aaKnown RBP7.97□□□□□ -1.13
USP40-202ENST00000409945 CLEC4GQ6UXB4 293 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 FBXW5Q969U6 566 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 TRMT2BQ96GJ1 504 aaKnown RBP7.97□□□□□ -1.13
USP40-202ENST00000409945 THUMPD2Q9BTF0 503 aaKnown RBP7.97□□□□□ -1.13
USP40-202ENST00000409945 CD244Q9BZW8 370 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 CATSPERZQ9NTU4 200 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 SPTLC3Q9NUV7 552 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 PLA2G2DQ9UNK4 145 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 TELO2Q9Y4R8 837 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 USP16Q9Y5T5 823 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 APAF1O14727 1248 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 MYO1BO43795 1136 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 PDGFRBP09619 1106 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 ST5P78524 1137 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 PLCL1Q15111 1095 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 PTRH1Q86Y79 214 aaKnown RBP7.97□□□□□ -1.13
USP40-202ENST00000409945 NUP43Q8NFH3 380 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 NLGN2Q8NFZ4 835 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 ATL2Q8NHH9 583 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 PI4K2BQ8TCG2 481 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 CHTF18Q8WVB6 975 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 ASIC4Q96FT7 647 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 GPR101Q96P66 508 aaPredicted RBP7.97□□□□□ -1.13
USP40-202ENST00000409945 X6R8D5 127 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 CARMIL3Q8ND23 1372 aa7.97□□□□□ -1.13
USP40-202ENST00000409945 DVL2O14641 736 aa7.96□□□□□ -1.13
USP40-202ENST00000409945 LTFP02788 710 aa7.96□□□□□ -1.13
USP40-202ENST00000409945 SERPINB2P05120 415 aa7.96□□□□□ -1.13
USP40-202ENST00000409945 BPIP17213 487 aa7.96□□□□□ -1.13
USP40-202ENST00000409945 KIR2DL1P43626 348 aaPredicted RBP7.96□□□□□ -1.13
USP40-202ENST00000409945 KIR2DL2P43627 348 aaPredicted RBP7.96□□□□□ -1.13
USP40-202ENST00000409945 TMPRSS15P98073 1019 aa7.96□□□□□ -1.13
USP40-202ENST00000409945 MTMR1Q13613 665 aa7.96□□□□□ -1.13
USP40-202ENST00000409945 DHCR24Q15392 516 aa7.96□□□□□ -1.13
USP40-202ENST00000409945 CPZQ66K79 652 aa7.96□□□□□ -1.13
USP40-202ENST00000409945 SLC23A3Q6PIS1 610 aa7.96□□□□□ -1.13
USP40-202ENST00000409945 DDX53Q86TM3 631 aaKnown RBP7.96□□□□□ -1.13
USP40-202ENST00000409945 NGEFQ8N5V2 710 aa7.96□□□□□ -1.13
USP40-202ENST00000409945 IRF2BPLQ9H1B7 796 aa7.96□□□□□ -1.13
USP40-202ENST00000409945 THG1LQ9NWX6 298 aaKnown RBP7.96□□□□□ -1.13
USP40-202ENST00000409945 KDM3BQ7LBC6 1761 aa7.96□□□□□ -1.14
USP40-202ENST00000409945 LAMB4A4D0S4 1761 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 PTPDC1A2A3K4 754 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 LCHNA4D1U4 455 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 FAM47E-STBD1D6RA91 191 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 POLRMTO00411 1230 aaKnown RBP7.95□□□□□ -1.14
USP40-202ENST00000409945 ADAM23O75077 832 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 HOXB7P09629 217 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 EIF2S2P20042 333 aaKnown RBP7.95□□□□□ -1.14
USP40-202ENST00000409945 TM4SF1P30408 202 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 PDE6BP35913 854 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 NFIXQ14938 502 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 FYB2Q5VWT5 728 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 UBE2R2Q712K3 238 aaPredicted RBP7.95□□□□□ -1.14
USP40-202ENST00000409945 LZTR1Q8N653 840 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.95□□□□□ -1.14
USP40-202ENST00000409945 ORAI3Q9BRQ5 295 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 ANGEL1Q9UNK9 670 aaKnown RBP7.95□□□□□ -1.14
USP40-202ENST00000409945 H0YIN7 160 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 CHL1O00533 1208 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 GPR39O43194 453 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 MYL6BP14649 208 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 DUSP4Q13115 394 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 ZNF792Q3KQV3 632 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 HABP4Q5JVS0 413 aaKnown RBP7.95□□□□□ -1.14
USP40-202ENST00000409945 ARHGAP36Q6ZRI8 547 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 C16orf59Q7L2K0 433 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 NBPF5PQ86XG9 351 aaPredicted RBP7.95□□□□□ -1.14
USP40-202ENST00000409945 CNBD1Q8NA66 436 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 CHST14Q8NCH0 376 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms