RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 CEP131Q9UPN4 1083 aa32.18■■■□□ 2.74
HMGB1-205ENST00000399494 FSCN2O14926 492 aa32.17■■■□□ 2.74
HMGB1-205ENST00000399494 EDIL3O43854 480 aa32.17■■■□□ 2.74
HMGB1-205ENST00000399494 NLRP11P59045 1033 aaKnown RBP32.17■■■□□ 2.74
HMGB1-205ENST00000399494 DUSP6Q16828 381 aa32.17■■■□□ 2.74
HMGB1-205ENST00000399494 PDE12Q6L8Q7 609 aaKnown RBP32.17■■■□□ 2.74
HMGB1-205ENST00000399494 EFCAB12Q6NXP0 572 aa32.17■■■□□ 2.74
HMGB1-205ENST00000399494 RASGRP4Q8TDF6 673 aa32.17■■■□□ 2.74
HMGB1-205ENST00000399494 MYH9P35579 1960 aaKnown RBP32.17■■■□□ 2.74
HMGB1-205ENST00000399494 RBM25P49756 843 aaKnown RBP32.16■■■□□ 2.74
HMGB1-205ENST00000399494 NHLH1Q02575 133 aa32.16■■■□□ 2.74
HMGB1-205ENST00000399494 LRRC55Q6ZSA7 311 aa32.16■■■□□ 2.74
HMGB1-205ENST00000399494 FAM167AQ96KS9 214 aa32.16■■■□□ 2.74
HMGB1-205ENST00000399494 CASD1Q96PB1 797 aa32.16■■■□□ 2.74
HMGB1-205ENST00000399494 CDCA3Q99618 268 aaPredicted RBP32.16■■■□□ 2.74
HMGB1-205ENST00000399494 TMEM117Q9H0C3 514 aa32.16■■■□□ 2.74
HMGB1-205ENST00000399494 RNF19AQ9NV58 838 aa32.16■■■□□ 2.74
HMGB1-205ENST00000399494 TCEAL9Q9UHQ7 104 aa32.16■■■□□ 2.74
HMGB1-205ENST00000399494 LZTS1Q9Y250 596 aa32.16■■■□□ 2.74
HMGB1-205ENST00000399494 SAMM50Q9Y512 469 aa32.16■■■□□ 2.74
HMGB1-205ENST00000399494 ZNF862O60290 1169 aa32.15■■■□□ 2.74
HMGB1-205ENST00000399494 PFKFB2O60825 505 aa32.15■■■□□ 2.74
HMGB1-205ENST00000399494 CDKL5O76039 1030 aa32.15■■■□□ 2.74
HMGB1-205ENST00000399494 LAG3P18627 525 aa32.15■■■□□ 2.74
HMGB1-205ENST00000399494 PLCB3Q01970 1234 aa32.15■■■□□ 2.74
HMGB1-205ENST00000399494 SCRN1Q12765 414 aa32.15■■■□□ 2.74
HMGB1-205ENST00000399494 PHF7Q9BWX1 381 aaPredicted RBP32.15■■■□□ 2.74
HMGB1-205ENST00000399494 AKT3Q9Y243 479 aa32.15■■■□□ 2.74
HMGB1-205ENST00000399494 PIEZO1Q92508 2521 aa32.15■■■□□ 2.74
HMGB1-205ENST00000399494 KCNC3Q14003 757 aa32.14■■■□□ 2.74
HMGB1-205ENST00000399494 BMP8AQ7Z5Y6 402 aa32.14■■■□□ 2.74
HMGB1-205ENST00000399494 BICD2Q8TD16 824 aa32.14■■■□□ 2.74
HMGB1-205ENST00000399494 SUSD6Q92537 303 aa32.14■■■□□ 2.74
HMGB1-205ENST00000399494 MRPS27Q92552 414 aaKnown RBP32.14■■■□□ 2.74
HMGB1-205ENST00000399494 DISC1Q9NRI5 854 aa32.14■■■□□ 2.74
HMGB1-205ENST00000399494 NRBP2Q9NSY0 501 aa32.14■■■□□ 2.74
HMGB1-205ENST00000399494 FSD2A1L4K1 749 aa32.13■■■□□ 2.73
HMGB1-205ENST00000399494 WDR64B1ANS9 1081 aa32.13■■■□□ 2.73
HMGB1-205ENST00000399494 EIF4BP23588 611 aaKnown RBP32.13■■■□□ 2.73
HMGB1-205ENST00000399494 TMOD1P28289 359 aa32.13■■■□□ 2.73
HMGB1-205ENST00000399494 TMEM184AQ6ZMB5 413 aa32.13■■■□□ 2.73
HMGB1-205ENST00000399494 WDFY4Q6ZS81 3184 aa32.13■■■□□ 2.73
HMGB1-205ENST00000399494 TRIM67Q6ZTA4 783 aa32.13■■■□□ 2.73
HMGB1-205ENST00000399494 ZNF710Q8N1W2 664 aa32.13■■■□□ 2.73
HMGB1-205ENST00000399494 LRRC71Q8N4P6 559 aa32.13■■■□□ 2.73
HMGB1-205ENST00000399494 MAP7D2Q96T17 732 aa32.13■■■□□ 2.73
HMGB1-205ENST00000399494 TECTAO75443 2155 aa32.12■■■□□ 2.73
HMGB1-205ENST00000399494 MSH4O15457 936 aa32.12■■■□□ 2.73
HMGB1-205ENST00000399494 DEXIO95424 95 aa32.12■■■□□ 2.73
HMGB1-205ENST00000399494 ZSCAN20P17040 1043 aaPredicted RBP32.12■■■□□ 2.73
HMGB1-205ENST00000399494 ATF7P17544 494 aaPredicted RBP32.12■■■□□ 2.73
HMGB1-205ENST00000399494 CCDC148Q8NFR7 591 aa32.12■■■□□ 2.73
HMGB1-205ENST00000399494 PUF60Q9UHX1 559 aaKnown RBP32.12■■■□□ 2.73
HMGB1-205ENST00000399494 HOXA2O43364 376 aa32.11■■■□□ 2.73
HMGB1-205ENST00000399494 OATP04181 439 aa32.11■■■□□ 2.73
HMGB1-205ENST00000399494 USP11P51784 963 aa32.11■■■□□ 2.73
HMGB1-205ENST00000399494 ZXDAP98168 799 aa32.11■■■□□ 2.73
HMGB1-205ENST00000399494 KCNT2Q6UVM3 1135 aa32.11■■■□□ 2.73
HMGB1-205ENST00000399494 ECHDC2Q86YB7 292 aa32.11■■■□□ 2.73
HMGB1-205ENST00000399494 RIT2Q99578 217 aa32.11■■■□□ 2.73
HMGB1-205ENST00000399494 KIF2CQ99661 725 aa32.11■■■□□ 2.73
HMGB1-205ENST00000399494 S1PR5Q9H228 398 aa32.11■■■□□ 2.73
HMGB1-205ENST00000399494 ZNF318Q5VUA4 2279 aa32.1■■■□□ 2.73
HMGB1-205ENST00000399494 MRE11P49959 708 aa32.1■■■□□ 2.73
HMGB1-205ENST00000399494 ME3Q16798 604 aa32.1■■■□□ 2.73
HMGB1-205ENST00000399494 PLPP4Q5VZY2 271 aa32.1■■■□□ 2.73
HMGB1-205ENST00000399494 ZNF668Q96K58 619 aaPredicted RBP32.1■■■□□ 2.73
HMGB1-205ENST00000399494 RPGRIP1Q96KN7 1286 aa32.1■■■□□ 2.73
HMGB1-205ENST00000399494 VPS54Q9P1Q0 977 aa32.1■■■□□ 2.73
HMGB1-205ENST00000399494 TMEM221A6NGB7 291 aa32.09■■■□□ 2.73
HMGB1-205ENST00000399494 M0R296 226 aa32.09■■■□□ 2.73
HMGB1-205ENST00000399494 GPC3P51654 580 aa32.09■■■□□ 2.73
HMGB1-205ENST00000399494 PRKCEQ02156 737 aa32.09■■■□□ 2.73
HMGB1-205ENST00000399494 UGCGQ16739 394 aa32.09■■■□□ 2.73
HMGB1-205ENST00000399494 NECAB1Q8N987 351 aa32.09■■■□□ 2.73
HMGB1-205ENST00000399494 SLC5A5Q92911 643 aa32.09■■■□□ 2.73
HMGB1-205ENST00000399494 NGRNQ9NPE2 291 aaKnown RBP32.09■■■□□ 2.73
HMGB1-205ENST00000399494 WDR81Q562E7 1941 aa32.08■■■□□ 2.73
HMGB1-205ENST00000399494 LARGE1O95461 756 aa32.08■■■□□ 2.73
HMGB1-205ENST00000399494 DARSP14868 501 aaKnown RBP32.08■■■□□ 2.73
HMGB1-205ENST00000399494 ANKRD54Q6NXT1 300 aa32.08■■■□□ 2.73
HMGB1-205ENST00000399494 GTF3C6Q969F1 213 aa32.08■■■□□ 2.73
HMGB1-205ENST00000399494 ZNF558Q96NG5 402 aa32.08■■■□□ 2.73
HMGB1-205ENST00000399494 TCF25Q9BQ70 676 aa32.08■■■□□ 2.73
HMGB1-205ENST00000399494 UNC45AQ9H3U1 944 aa32.08■■■□□ 2.73
HMGB1-205ENST00000399494 HIDE1A8MVS5 230 aa32.07■■■□□ 2.72
HMGB1-205ENST00000399494 GAS7O60861 476 aa32.07■■■□□ 2.72
HMGB1-205ENST00000399494 SFNP31947 248 aa32.07■■■□□ 2.72
HMGB1-205ENST00000399494 PBX3P40426 434 aa32.07■■■□□ 2.72
HMGB1-205ENST00000399494 RABEP1Q15276 862 aa32.07■■■□□ 2.72
HMGB1-205ENST00000399494 TARBP2Q15633 366 aaKnown RBP32.07■■■□□ 2.72
HMGB1-205ENST00000399494 CLLU1OSQ5K130 101 aa32.07■■■□□ 2.72
HMGB1-205ENST00000399494 ABI1Q8IZP0 508 aa32.07■■■□□ 2.72
HMGB1-205ENST00000399494 LRRC43Q8N309 656 aa32.07■■■□□ 2.72
HMGB1-205ENST00000399494 GJA10Q969M2 543 aa32.07■■■□□ 2.72
HMGB1-205ENST00000399494 PBXIP1Q96AQ6 731 aa32.07■■■□□ 2.72
HMGB1-205ENST00000399494 ENTPD7Q9NQZ7 604 aa32.07■■■□□ 2.72
HMGB1-205ENST00000399494 SH3GLB2Q9NR46 395 aa32.07■■■□□ 2.72
HMGB1-205ENST00000399494 LIMCH1Q9UPQ0 1083 aa32.07■■■□□ 2.72
HMGB1-205ENST00000399494 A0A0U1RQF3 1178 aa32.06■■■□□ 2.72
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms