RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 CDKL2Q92772 493 aa11.87□□□□□ -0.51
HPS4-202ENST00000398145 FGFR1OP2Q9NVK5 253 aa11.87□□□□□ -0.51
HPS4-202ENST00000398145 GGT7Q9UJ14 662 aa11.87□□□□□ -0.51
HPS4-202ENST00000398145 ZFP69BQ9UJL9 534 aa11.87□□□□□ -0.51
HPS4-202ENST00000398145 USP17L15C9J2P7 530 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 USP17L13C9JLJ4 530 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 USP17L11C9JVI0 530 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 USP17L18D6R9N7 530 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 USP17L22D6RA61 530 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 USP17L17D6RBQ6 530 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 USP17L19D6RCP7 530 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 USP17L20D6RJB6 530 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 FGFR4P22455 802 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 SOX5P35711 763 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 AARSP49588 968 aaKnown RBP eCLIP11.86□□□□□ -0.51
HPS4-202ENST00000398145 GALCP54803 685 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 BASP1P80723 227 aaKnown RBP11.86□□□□□ -0.51
HPS4-202ENST00000398145 CDK17Q00537 523 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 PDE1BQ01064 536 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 USP17L24Q0WX57 530 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 BRDTQ58F21 947 aaPredicted RBP11.86□□□□□ -0.51
HPS4-202ENST00000398145 FOXR1Q6PIV2 292 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 USP17L6PQ6QN14 398 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 MAP7D3Q8IWC1 876 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 MORC4Q8TE76 937 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 WNT8AQ9H1J5 351 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 FAF1Q9UNN5 650 aaPredicted RBP11.86□□□□□ -0.51
HPS4-202ENST00000398145 CNTNAP5Q8WYK1 1306 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 TOM1O60784 492 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 CDR2Q01850 454 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 EZH2Q15910 746 aaKnown RBP11.86□□□□□ -0.51
HPS4-202ENST00000398145 FAM20AQ96MK3 541 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 HEMGNQ9BXL5 484 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 OSBPL1AQ9BXW6 950 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 TMOD4Q9NZQ9 345 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 ECM2O94769 699 aaPredicted RBP11.86□□□□□ -0.51
HPS4-202ENST00000398145 TFRCP02786 760 aaKnown RBP11.86□□□□□ -0.51
HPS4-202ENST00000398145 BMP3P12645 472 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 DBN1Q16643 649 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 TTI2Q6NXR4 508 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 PPP1R18Q6NYC8 613 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 DNAJC24Q6P3W2 148 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 CLEC4GQ6UXB4 293 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 ZNF564Q8TBZ8 553 aaPredicted RBP11.86□□□□□ -0.51
HPS4-202ENST00000398145 MAML1Q92585 1016 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 SYN2Q92777 582 aaPredicted RBP11.86□□□□□ -0.51
HPS4-202ENST00000398145 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.86□□□□□ -0.515e-8■■■■■ 32.9
HPS4-202ENST00000398145 THEGQ9P2T0 379 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 PDXKO00764 312 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 GCLMP48507 274 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 ZNF746Q6NUN9 644 aaPredicted RBP11.86□□□□□ -0.51
HPS4-202ENST00000398145 ST13P4Q8IZP2 240 aaPredicted RBP11.86□□□□□ -0.51
HPS4-202ENST00000398145 GABPB2Q8TAK5 448 aaPredicted RBP11.86□□□□□ -0.51
HPS4-202ENST00000398145 TTC25Q96NG3 672 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 NEURL4Q96JN8 1562 aa11.86□□□□□ -0.51
HPS4-202ENST00000398145 ABCA9Q8IUA7 1624 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 IQANK1A0A1B0GTG1 560 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 MCF2LO15068 1137 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 PPFIA2O75334 1257 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 HAUS5O94927 633 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 DYNLT1P63172 113 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 MCF2L2Q86YR7 1114 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 PROCA1Q8NCQ7 364 aaPredicted RBP11.85□□□□□ -0.51
HPS4-202ENST00000398145 DDX27Q96GQ7 796 aaKnown RBP11.85□□□□□ -0.51
HPS4-202ENST00000398145 MIS12Q9H081 205 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 DHX36Q9H2U1 1008 aaKnown RBP11.85□□□□□ -0.51
HPS4-202ENST00000398145 KMT5AQ9NQR1 393 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 RASSF10A6NK89 507 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 EIF4E1BA6NMX2 242 aaKnown RBP11.85□□□□□ -0.51
HPS4-202ENST00000398145 P4HA1P13674 534 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 CCND1P24385 295 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 IRX1P78414 480 aaPredicted RBP11.85□□□□□ -0.51
HPS4-202ENST00000398145 XXYLT1Q8NBI6 393 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 TTC16Q8NEE8 873 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 NEDD1Q8NHV4 660 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 CASKIN2Q8WXE0 1202 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 CENPKQ9BS16 269 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 DCTN4Q9UJW0 460 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 SSX2IPQ9Y2D8 614 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 PLEKHG2Q9H7P9 1386 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 LRRIQ4A6NIV6 560 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 RFX1P22670 979 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 TTLL12Q14166 644 aaPredicted RBP11.85□□□□□ -0.51
HPS4-202ENST00000398145 C12orf60Q5U649 245 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 NXNQ6DKJ4 435 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 RFX6Q8HWS3 928 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 MSL3Q8N5Y2 521 aaKnown RBP11.85□□□□□ -0.51
HPS4-202ENST00000398145 CAVIN3Q969G5 261 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 FAM84BQ96KN1 310 aaPredicted RBP11.85□□□□□ -0.51
HPS4-202ENST00000398145 CYTH2Q99418 400 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 ERP44Q9BS26 406 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 IFT122Q9HBG6 1241 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.85□□□□□ -0.51
HPS4-202ENST00000398145 DEPDC5O75140 1603 aa11.85□□□□□ -0.51
HPS4-202ENST00000398145 TJP3O95049 919 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 ZWINTO95229 277 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 ARHGAP27Q6ZUM4 889 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 TTC17Q96AE7 1141 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 SH3GL3Q99963 347 aa11.84□□□□□ -0.51
HPS4-202ENST00000398145 NUP85Q9BW27 656 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms