RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 KRT13P13646 458 aa12.16□□□□□ -0.46
TCOF1-203ENST00000394269 PSMC5P62195 406 aa12.16□□□□□ -0.46
TCOF1-203ENST00000394269 MTERF2Q49AM1 385 aa12.16□□□□□ -0.46
TCOF1-203ENST00000394269 CBWD6Q4V339 395 aa12.16□□□□□ -0.46
TCOF1-203ENST00000394269 CBWD3Q5JTY5 395 aa12.16□□□□□ -0.46
TCOF1-203ENST00000394269 CBWD5Q5RIA9 395 aa12.16□□□□□ -0.46
TCOF1-203ENST00000394269 VSIG10LQ86VR7 867 aa12.16□□□□□ -0.46
TCOF1-203ENST00000394269 BICD1Q96G01 975 aa12.16□□□□□ -0.46
TCOF1-203ENST00000394269 ALS2CR12Q96Q35 445 aa12.16□□□□□ -0.46
TCOF1-203ENST00000394269 HOXC10Q9NYD6 342 aa12.16□□□□□ -0.46
TCOF1-203ENST00000394269 AJAP1Q9UKB5 411 aaPredicted RBP12.16□□□□□ -0.46
TCOF1-203ENST00000394269 PCDHA10Q9Y5I2 948 aa12.16□□□□□ -0.46
TCOF1-203ENST00000394269 FRMPD4Q14CM0 1322 aa12.16□□□□□ -0.46
TCOF1-203ENST00000394269 SLC26A4O43511 780 aa12.16□□□□□ -0.46
TCOF1-203ENST00000394269 USP2O75604 605 aaPredicted RBP12.16□□□□□ -0.46
TCOF1-203ENST00000394269 CCDC181Q5TID7 509 aa12.16□□□□□ -0.46
TCOF1-203ENST00000394269 RABGGTAQ92696 567 aa12.16□□□□□ -0.46
TCOF1-203ENST00000394269 SGIP1Q9BQI5 828 aa12.16□□□□□ -0.46
TCOF1-203ENST00000394269 ACAD9Q9H845 621 aa12.16□□□□□ -0.46
TCOF1-203ENST00000394269 ARFGAP3Q9NP61 516 aa12.16□□□□□ -0.46
TCOF1-203ENST00000394269 H2AFXP16104 143 aaPredicted RBP12.15□□□□□ -0.46
TCOF1-203ENST00000394269 MAPK7Q13164 816 aa12.15□□□□□ -0.46
TCOF1-203ENST00000394269 CATSPERGQ6ZRH7 1159 aa12.15□□□□□ -0.46
TCOF1-203ENST00000394269 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.15□□□□□ -0.46
TCOF1-203ENST00000394269 COG1Q8WTW3 980 aa12.15□□□□□ -0.46
TCOF1-203ENST00000394269 FIZ1Q96SL8 496 aa12.15□□□□□ -0.46
TCOF1-203ENST00000394269 PNKPQ96T60 521 aa12.15□□□□□ -0.46
TCOF1-203ENST00000394269 ODF2LQ9ULJ1 636 aa12.15□□□□□ -0.46
TCOF1-203ENST00000394269 SPDYE16A6NNV3 312 aaPredicted RBP12.15□□□□□ -0.46
TCOF1-203ENST00000394269 C19orf81C9J6K1 198 aa12.15□□□□□ -0.46
TCOF1-203ENST00000394269 IRF6O14896 467 aa12.15□□□□□ -0.46
TCOF1-203ENST00000394269 BCRP11274 1271 aa12.15□□□□□ -0.46
TCOF1-203ENST00000394269 ABCB4P21439 1286 aa12.15□□□□□ -0.46
TCOF1-203ENST00000394269 KLRC1P26715 233 aa12.15□□□□□ -0.46
TCOF1-203ENST00000394269 C2orf54Q08AI8 447 aa12.15□□□□□ -0.46
TCOF1-203ENST00000394269 ANO5Q75V66 913 aa12.15□□□□□ -0.46
TCOF1-203ENST00000394269 RSRC2Q7L4I2 434 aaKnown RBP12.15□□□□□ -0.46
TCOF1-203ENST00000394269 IQCDQ96DY2 449 aa12.15□□□□□ -0.46
TCOF1-203ENST00000394269 POP1Q99575 1024 aaKnown RBP12.15□□□□□ -0.46
TCOF1-203ENST00000394269 TSGA10Q9BZW7 698 aa12.15□□□□□ -0.46
TCOF1-203ENST00000394269 CYP39A1Q9NYL5 469 aa12.15□□□□□ -0.46
TCOF1-203ENST00000394269 DDX41Q9UJV9 622 aaKnown RBP12.15□□□□□ -0.46
TCOF1-203ENST00000394269 ARFGEF1Q9Y6D6 1849 aa12.15□□□□□ -0.46
TCOF1-203ENST00000394269 IRX3P78415 501 aaPredicted RBP12.15□□□□□ -0.46
TCOF1-203ENST00000394269 ZNF571Q7Z3V5 609 aaPredicted RBP12.15□□□□□ -0.46
TCOF1-203ENST00000394269 TRIM58Q8NG06 486 aa12.15□□□□□ -0.46
TCOF1-203ENST00000394269 RBM46Q8TBY0 533 aaKnown RBP12.15□□□□□ -0.46
TCOF1-203ENST00000394269 U2AF1L4Q8WU68 220 aaKnown RBP12.15□□□□□ -0.46
TCOF1-203ENST00000394269 NOX5Q96PH1 765 aa12.15□□□□□ -0.46
TCOF1-203ENST00000394269 GANQ9H2C0 597 aa12.15□□□□□ -0.46
TCOF1-203ENST00000394269 OGFRQ9NZT2 677 aa12.15□□□□□ -0.46
TCOF1-203ENST00000394269 DNAJC12Q9UKB3 198 aa12.15□□□□□ -0.46
TCOF1-203ENST00000394269 ZMYM2Q9UBW7 1377 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 RPTORQ8N122 1335 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 DLATP10515 647 aaKnown RBP12.14□□□□□ -0.47
TCOF1-203ENST00000394269 GUCY2CP25092 1073 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 HNRNPH3P31942 346 aaKnown RBP12.14□□□□□ -0.47
TCOF1-203ENST00000394269 FMO5P49326 533 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 BMS1Q14692 1282 aaKnown RBP12.14□□□□□ -0.47
TCOF1-203ENST00000394269 WHAMMP3Q1A5X7 153 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 IQCEQ6IPM2 695 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 B3GNT9Q6UX72 402 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 MS4A14Q96JA4 679 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 MOV10L1Q9BXT6 1211 aaKnown RBP12.14□□□□□ -0.47
TCOF1-203ENST00000394269 R3HDMLQ9H3Y0 253 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 JPH1Q9HDC5 661 aaPredicted RBP12.14□□□□□ -0.47
TCOF1-203ENST00000394269 SEL1LQ9UBV2 794 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 DENND3A2RUS2 1198 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 EIF3DO15371 548 aaKnown RBP eCLIP12.14□□□□□ -0.47
TCOF1-203ENST00000394269 PALMO75781 387 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 PGK2P07205 417 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 PLS3P13797 630 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 SMTNP53814 917 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 CDK17Q00537 523 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 KRT76Q01546 638 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 ZNF668Q96K58 619 aaPredicted RBP12.14□□□□□ -0.47
TCOF1-203ENST00000394269 NUCKS1Q9H1E3 243 aaKnown RBP12.14□□□□□ -0.47
TCOF1-203ENST00000394269 LUC7LQ9NQ29 371 aaKnown RBP12.14□□□□□ -0.47
TCOF1-203ENST00000394269 KMT5AQ9NQR1 393 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 AFG3L2Q9Y4W6 797 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 EMSYQ7Z589 1322 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 PDE2AO00408 941 aaPredicted RBP12.14□□□□□ -0.47
TCOF1-203ENST00000394269 ZNF862O60290 1169 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 RGS20O76081 388 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 HARSP12081 509 aaKnown RBP12.14□□□□□ -0.47
TCOF1-203ENST00000394269 MARSP56192 900 aaKnown RBP12.14□□□□□ -0.47
TCOF1-203ENST00000394269 DMP1Q13316 513 aaPredicted RBP12.14□□□□□ -0.47
TCOF1-203ENST00000394269 DRAP1Q14919 205 aaPredicted RBP12.14□□□□□ -0.47
TCOF1-203ENST00000394269 ALKBH5Q6P6C2 394 aaKnown RBP12.14□□□□□ -0.47
TCOF1-203ENST00000394269 TRAPPC11Q7Z392 1133 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 TMEM143Q96AN5 459 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 ACCSQ96QU6 501 aa12.14□□□□□ -0.47
TCOF1-203ENST00000394269 AMPD2Q01433 879 aa12.13□□□□□ -0.47
TCOF1-203ENST00000394269 MYL7Q01449 175 aa12.13□□□□□ -0.47
TCOF1-203ENST00000394269 MAP2K1Q02750 393 aaPredicted RBP12.13□□□□□ -0.47
TCOF1-203ENST00000394269 SLC18A3Q16572 532 aa12.13□□□□□ -0.47
TCOF1-203ENST00000394269 BMT2Q1RMZ1 405 aa12.13□□□□□ -0.47
TCOF1-203ENST00000394269 GLYCTKQ8IVS8 523 aa12.13□□□□□ -0.47
TCOF1-203ENST00000394269 CCDC60Q8IWA6 550 aaPredicted RBP12.13□□□□□ -0.47
TCOF1-203ENST00000394269 ANKZF1Q9H8Y5 726 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms