RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 VPS36Q86VN1 386 aa21.25■□□□□ 0.99
SHROOM1-202ENST00000378676 KCTD17Q8N5Z5 321 aa21.25■□□□□ 0.99
SHROOM1-202ENST00000378676 AGPAT3Q9NRZ7 376 aa21.25■□□□□ 0.99
SHROOM1-202ENST00000378676 TMX2Q9Y320 296 aa21.25■□□□□ 0.99
SHROOM1-202ENST00000378676 A0A0A6YYK5 440 aaPredicted RBP21.25■□□□□ 0.99
SHROOM1-202ENST00000378676 CLRN2A0PK11 232 aa21.25■□□□□ 0.99
SHROOM1-202ENST00000378676 H0YIN7 160 aa21.25■□□□□ 0.99
SHROOM1-202ENST00000378676 PGRMC1O00264 195 aaKnown RBP21.25■□□□□ 0.99
SHROOM1-202ENST00000378676 EIF3HO15372 352 aaKnown RBP eCLIP21.25■□□□□ 0.992e-6■■■□□ 15.9
SHROOM1-202ENST00000378676 ZNF131P52739 623 aa21.25■□□□□ 0.99
SHROOM1-202ENST00000378676 SKOR1P84550 965 aa21.25■□□□□ 0.99
SHROOM1-202ENST00000378676 ZNF720Q7Z2F6 126 aa21.25■□□□□ 0.99
SHROOM1-202ENST00000378676 GLYCTKQ8IVS8 523 aa21.25■□□□□ 0.99
SHROOM1-202ENST00000378676 WHAMMQ8TF30 809 aa21.25■□□□□ 0.99
SHROOM1-202ENST00000378676 RANBP17Q9H2T7 1088 aaKnown RBP21.25■□□□□ 0.99
SHROOM1-202ENST00000378676 DNAJC12Q9UKB3 198 aa21.25■□□□□ 0.99
SHROOM1-202ENST00000378676 DRAP1Q14919 205 aaPredicted RBP21.24■□□□□ 0.99
SHROOM1-202ENST00000378676 ZYXQ15942 572 aaKnown RBP21.24■□□□□ 0.99
SHROOM1-202ENST00000378676 SAMD1Q6SPF0 538 aaPredicted RBP21.24■□□□□ 0.99
SHROOM1-202ENST00000378676 NT5DC3Q86UY8 548 aa21.24■□□□□ 0.99
SHROOM1-202ENST00000378676 DDX42Q86XP3 938 aaKnown RBP eCLIP21.24■□□□□ 0.99
SHROOM1-202ENST00000378676 FAM178BQ8IXR5 827 aa21.24■□□□□ 0.99
SHROOM1-202ENST00000378676 DDX47Q9H0S4 455 aaKnown RBP21.24■□□□□ 0.99
SHROOM1-202ENST00000378676 ISCUQ9H1K1 167 aa21.24■□□□□ 0.99
SHROOM1-202ENST00000378676 TAF1DQ9H5J8 278 aaPredicted RBP21.24■□□□□ 0.99
SHROOM1-202ENST00000378676 OSGEPQ9NPF4 335 aa21.24■□□□□ 0.99
SHROOM1-202ENST00000378676 SYNPO2Q9UMS6 1093 aa21.24■□□□□ 0.99
SHROOM1-202ENST00000378676 ITGA4P13612 1032 aa21.24■□□□□ 0.99
SHROOM1-202ENST00000378676 CEP55Q53EZ4 464 aa21.24■□□□□ 0.99
SHROOM1-202ENST00000378676 DAAM2Q86T65 1068 aa21.24■□□□□ 0.99
SHROOM1-202ENST00000378676 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.24■□□□□ 0.996e-7■■■□□ 18.8
SHROOM1-202ENST00000378676 SYT11Q9BT88 431 aa21.24■□□□□ 0.99
SHROOM1-202ENST00000378676 MKNK1Q9BUB5 465 aa21.24■□□□□ 0.99
SHROOM1-202ENST00000378676 NEUROG2Q9H2A3 272 aa21.24■□□□□ 0.99
SHROOM1-202ENST00000378676 RASSF4Q9H2L5 321 aa21.24■□□□□ 0.99
SHROOM1-202ENST00000378676 DMAC2Q9NW81 257 aa21.24■□□□□ 0.99
SHROOM1-202ENST00000378676 HERC5Q9UII4 1024 aaKnown RBP21.24■□□□□ 0.99
SHROOM1-202ENST00000378676 INTUQ9ULD6 942 aa21.24■□□□□ 0.99
SHROOM1-202ENST00000378676 UBE4BO95155 1302 aa21.24■□□□□ 0.99
SHROOM1-202ENST00000378676 BHMG1C9JSJ3 638 aaPredicted RBP21.23■□□□□ 0.99
SHROOM1-202ENST00000378676 HSPA9P38646 679 aaKnown RBP21.23■□□□□ 0.99
SHROOM1-202ENST00000378676 PDCLQ13371 301 aa21.23■□□□□ 0.99
SHROOM1-202ENST00000378676 ZNF577Q9BSK1 485 aa21.23■□□□□ 0.99
SHROOM1-202ENST00000378676 INTS2Q9H0H0 1204 aaKnown RBP21.23■□□□□ 0.99
SHROOM1-202ENST00000378676 ZBTB21Q9ULJ3 1066 aa21.23■□□□□ 0.99
SHROOM1-202ENST00000378676 NCANO14594 1321 aa21.23■□□□□ 0.99
SHROOM1-202ENST00000378676 PPP1R12BO60237 982 aaPredicted RBP21.23■□□□□ 0.99
SHROOM1-202ENST00000378676 CLSTN1O94985 981 aa21.23■□□□□ 0.99
SHROOM1-202ENST00000378676 VIL1P09327 827 aaKnown RBP21.23■□□□□ 0.99
SHROOM1-202ENST00000378676 CCT5P48643 541 aa21.23■□□□□ 0.99
SHROOM1-202ENST00000378676 ATP1A2P50993 1020 aa21.23■□□□□ 0.99
SHROOM1-202ENST00000378676 ODR4Q5SWX8 454 aa21.23■□□□□ 0.99
SHROOM1-202ENST00000378676 CDAN1Q8IWY9 1227 aa21.23■□□□□ 0.99
SHROOM1-202ENST00000378676 RASGEF1CQ8N431 466 aa21.23■□□□□ 0.99
SHROOM1-202ENST00000378676 CALR3Q96L12 384 aaKnown RBP21.23■□□□□ 0.99
SHROOM1-202ENST00000378676 STK33Q9BYT3 514 aa21.23■□□□□ 0.99
SHROOM1-202ENST00000378676 GOPCQ9HD26 462 aa21.23■□□□□ 0.99
SHROOM1-202ENST00000378676 SUCLA2Q9P2R7 463 aaPredicted RBP21.23■□□□□ 0.99
SHROOM1-202ENST00000378676 MAPK7Q13164 816 aa21.22■□□□□ 0.99
SHROOM1-202ENST00000378676 HLTFQ14527 1009 aaKnown RBP eCLIP21.22■□□□□ 0.99
SHROOM1-202ENST00000378676 CD302Q8IX05 232 aa21.22■□□□□ 0.99
SHROOM1-202ENST00000378676 LXNQ9BS40 222 aa21.22■□□□□ 0.99
SHROOM1-202ENST00000378676 EFCC1Q9HA90 598 aa21.22■□□□□ 0.99
SHROOM1-202ENST00000378676 SEL1LQ9UBV2 794 aa21.22■□□□□ 0.99
SHROOM1-202ENST00000378676 SART1O43290 800 aaKnown RBP21.22■□□□□ 0.99
SHROOM1-202ENST00000378676 B3GNT9Q6UX72 402 aa21.22■□□□□ 0.99
SHROOM1-202ENST00000378676 HS2ST1Q7LGA3 356 aa21.22■□□□□ 0.99
SHROOM1-202ENST00000378676 DAW1Q8N136 415 aa21.22■□□□□ 0.99
SHROOM1-202ENST00000378676 C7orf43Q8WVR3 580 aa21.22■□□□□ 0.99
SHROOM1-202ENST00000378676 HES6Q96HZ4 224 aa21.22■□□□□ 0.99
SHROOM1-202ENST00000378676 NACC1Q96RE7 527 aa21.22■□□□□ 0.99
SHROOM1-202ENST00000378676 FBXO28Q9NVF7 368 aa21.22■□□□□ 0.99
SHROOM1-202ENST00000378676 PLAAQ9Y263 795 aa21.22■□□□□ 0.99
SHROOM1-202ENST00000378676 DDX39AO00148 427 aaKnown RBP21.21■□□□□ 0.99
SHROOM1-202ENST00000378676 BUB1BO60566 1050 aaPredicted RBP21.21■□□□□ 0.99
SHROOM1-202ENST00000378676 MYL7Q01449 175 aa21.21■□□□□ 0.99
SHROOM1-202ENST00000378676 PLS1Q14651 629 aa21.21■□□□□ 0.99
SHROOM1-202ENST00000378676 PALB2Q86YC2 1186 aa21.21■□□□□ 0.99
SHROOM1-202ENST00000378676 BCAS4Q8TDM0 211 aa21.21■□□□□ 0.99
SHROOM1-202ENST00000378676 CAMKK2Q96RR4 588 aa21.21■□□□□ 0.99
SHROOM1-202ENST00000378676 ODF2LQ9ULJ1 636 aa21.21■□□□□ 0.99
SHROOM1-202ENST00000378676 BCS1LQ9Y276 419 aa21.21■□□□□ 0.99
SHROOM1-202ENST00000378676 CNTNAP1P78357 1384 aa21.21■□□□□ 0.99
SHROOM1-202ENST00000378676 KRIT1O00522 736 aa21.21■□□□□ 0.99
SHROOM1-202ENST00000378676 HIP1RO75146 1068 aa21.21■□□□□ 0.99
SHROOM1-202ENST00000378676 ABCB4P21439 1286 aa21.21■□□□□ 0.99
SHROOM1-202ENST00000378676 NPEPPSP55786 919 aa21.21■□□□□ 0.99
SHROOM1-202ENST00000378676 CORO7P57737 925 aa21.21■□□□□ 0.99
SHROOM1-202ENST00000378676 LMBR1Q8WVP7 490 aa21.21■□□□□ 0.99
SHROOM1-202ENST00000378676 ARHGEF26Q96DR7 871 aa21.21■□□□□ 0.99
SHROOM1-202ENST00000378676 TAS2R14Q9NYV8 317 aa21.21■□□□□ 0.99
SHROOM1-202ENST00000378676 FRMD4BQ9Y2L6 1034 aa21.21■□□□□ 0.99
SHROOM1-202ENST00000378676 ZNFX1Q9P2E3 1918 aaKnown RBP21.2■□□□□ 0.98
SHROOM1-202ENST00000378676 SPDYE2BA6NHP3 402 aa21.2■□□□□ 0.98
SHROOM1-202ENST00000378676 PPIP5K2O43314 1243 aa21.2■□□□□ 0.98
SHROOM1-202ENST00000378676 PPP1R37O75864 691 aa21.2■□□□□ 0.98
SHROOM1-202ENST00000378676 SPDYE6P0CI01 402 aa21.2■□□□□ 0.98
SHROOM1-202ENST00000378676 LMNB1P20700 586 aa21.2■□□□□ 0.98
SHROOM1-202ENST00000378676 UAP1Q16222 522 aaPredicted RBP21.2■□□□□ 0.98
SHROOM1-202ENST00000378676 ARHGAP44Q17R89 818 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms