RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 MAEAQ7L5Y9 396 aa14.89□□□□□ -0.03
VPS28-202ENST00000377348 KCNK18Q7Z418 384 aa14.89□□□□□ -0.03
VPS28-202ENST00000377348 PRPF31Q8WWY3 499 aaKnown RBP14.89□□□□□ -0.03
VPS28-202ENST00000377348 LINC01599Q8WXQ3 324 aa14.89□□□□□ -0.03
VPS28-202ENST00000377348 NLRP4Q96MN2 994 aa14.89□□□□□ -0.03
VPS28-202ENST00000377348 PNMA5Q96PV4 448 aa14.89□□□□□ -0.03
VPS28-202ENST00000377348 SLC9A7Q96T83 725 aa14.89□□□□□ -0.03
VPS28-202ENST00000377348 TMX1Q9H3N1 280 aa14.89□□□□□ -0.03
VPS28-202ENST00000377348 ATP6V0A4Q9HBG4 840 aa14.89□□□□□ -0.03
VPS28-202ENST00000377348 TFIP11Q9UBB9 837 aaKnown RBP14.89□□□□□ -0.03
VPS28-202ENST00000377348 DAXXQ9UER7 740 aaPredicted RBP14.89□□□□□ -0.03
VPS28-202ENST00000377348 FBXO2Q9UK22 296 aaPredicted RBP14.89□□□□□ -0.03
VPS28-202ENST00000377348 DBR1Q9UK59 544 aaKnown RBP14.89□□□□□ -0.03
VPS28-202ENST00000377348 YBX2Q9Y2T7 364 aaKnown RBP14.89□□□□□ -0.03
VPS28-202ENST00000377348 CHD9Q3L8U1 2897 aa14.89□□□□□ -0.03
VPS28-202ENST00000377348 LOXHD1Q8IVV2 1947 aa14.88□□□□□ -0.03
VPS28-202ENST00000377348 A0A087WZ62 844 aa14.88□□□□□ -0.03
VPS28-202ENST00000377348 ARHGEF35A5YM69 484 aa14.88□□□□□ -0.03
VPS28-202ENST00000377348 DGAT1O75907 488 aa14.88□□□□□ -0.03
VPS28-202ENST00000377348 MUTP22033 750 aa14.88□□□□□ -0.03
VPS28-202ENST00000377348 DNAJB2P25686 324 aa14.88□□□□□ -0.03
VPS28-202ENST00000377348 CABP7Q86V35 215 aa14.88□□□□□ -0.03
VPS28-202ENST00000377348 HERC6Q8IVU3 1022 aa14.88□□□□□ -0.03
VPS28-202ENST00000377348 EXOC8Q8IYI6 725 aa14.88□□□□□ -0.03
VPS28-202ENST00000377348 MYOCDQ8IZQ8 938 aa14.88□□□□□ -0.03
VPS28-202ENST00000377348 USP38Q8NB14 1042 aa14.88□□□□□ -0.03
VPS28-202ENST00000377348 CLIC6Q96NY7 704 aa14.88□□□□□ -0.03
VPS28-202ENST00000377348 FDXACB1Q9BRP7 624 aaPredicted RBP14.88□□□□□ -0.03
VPS28-202ENST00000377348 BHMT2Q9H2M3 363 aa14.88□□□□□ -0.03
VPS28-202ENST00000377348 ERVK-5Q9HDB9 667 aa14.88□□□□□ -0.03
VPS28-202ENST00000377348 GPRC5CQ9NQ84 441 aa14.88□□□□□ -0.03
VPS28-202ENST00000377348 ST3GAL5Q9UNP4 418 aa14.88□□□□□ -0.03
VPS28-202ENST00000377348 ZDHHC9Q9Y397 364 aa14.88□□□□□ -0.03
VPS28-202ENST00000377348 COL4A3BPQ9Y5P4 624 aa14.88□□□□□ -0.03
VPS28-202ENST00000377348 STK24Q9Y6E0 443 aa14.88□□□□□ -0.03
VPS28-202ENST00000377348 PTPRSQ13332 1948 aa14.88□□□□□ -0.03
VPS28-202ENST00000377348 MICAL3Q7RTP6 2002 aa14.87□□□□□ -0.03
VPS28-202ENST00000377348 ENPP3O14638 875 aa14.87□□□□□ -0.03
VPS28-202ENST00000377348 EFCAB14O75071 495 aa14.87□□□□□ -0.03
VPS28-202ENST00000377348 BRD1O95696 1058 aa14.87□□□□□ -0.03
VPS28-202ENST00000377348 AMHP03971 560 aa14.87□□□□□ -0.03
VPS28-202ENST00000377348 SRGAP2CP0DJJ0 459 aa14.87□□□□□ -0.03
VPS28-202ENST00000377348 PDIA4P13667 645 aaKnown RBP14.87□□□□□ -0.03
VPS28-202ENST00000377348 DARSP14868 501 aaKnown RBP14.87□□□□□ -0.03
VPS28-202ENST00000377348 EIF4BP23588 611 aaKnown RBP14.87□□□□□ -0.03
VPS28-202ENST00000377348 LONP1P36776 959 aaKnown RBP14.87□□□□□ -0.03
VPS28-202ENST00000377348 LAMTOR4Q0VGL1 99 aa14.87□□□□□ -0.03
VPS28-202ENST00000377348 GRB10Q13322 594 aa14.87□□□□□ -0.03
VPS28-202ENST00000377348 SLC39A14Q15043 492 aa14.87□□□□□ -0.03
VPS28-202ENST00000377348 PADI6Q6TGC4 694 aa14.87□□□□□ -0.03
VPS28-202ENST00000377348 Q7L0L9 218 aa14.87□□□□□ -0.03
VPS28-202ENST00000377348 RTN4RL1Q86UN2 441 aaPredicted RBP14.87□□□□□ -0.03
VPS28-202ENST00000377348 PHOSPHO2Q8TCD6 241 aa14.87□□□□□ -0.03
VPS28-202ENST00000377348 ASAP3Q8TDY4 903 aa14.87□□□□□ -0.03
VPS28-202ENST00000377348 TCP11Q8WWU5 503 aa14.87□□□□□ -0.03
VPS28-202ENST00000377348 PSPC1Q8WXF1 523 aaKnown RBP14.87□□□□□ -0.03
VPS28-202ENST00000377348 ZNF396Q96N95 335 aaPredicted RBP14.87□□□□□ -0.03
VPS28-202ENST00000377348 CSRNP2Q9H175 543 aa14.87□□□□□ -0.03
VPS28-202ENST00000377348 POLD4Q9HCU8 107 aa14.87□□□□□ -0.03
VPS28-202ENST00000377348 GAS2O43903 313 aaKnown RBP14.86□□□□□ -0.03
VPS28-202ENST00000377348 MGEA5O60502 916 aa14.86□□□□□ -0.03
VPS28-202ENST00000377348 UPP2O95045 317 aa14.86□□□□□ -0.03
VPS28-202ENST00000377348 IBSPP21815 317 aaPredicted RBP14.86□□□□□ -0.03
VPS28-202ENST00000377348 NASPP49321 788 aaPredicted RBP14.86□□□□□ -0.03
VPS28-202ENST00000377348 KARSQ15046 597 aaKnown RBP14.86□□□□□ -0.03
VPS28-202ENST00000377348 STK38Q15208 465 aa14.86□□□□□ -0.03
VPS28-202ENST00000377348 HYIQ5T013 277 aa14.86□□□□□ -0.03
VPS28-202ENST00000377348 FAM102BQ5T8I3 360 aa14.86□□□□□ -0.03
VPS28-202ENST00000377348 USP49Q70CQ1 688 aa14.86□□□□□ -0.03
VPS28-202ENST00000377348 ZNF410Q86VK4 478 aa14.86□□□□□ -0.03
VPS28-202ENST00000377348 LINC00301Q8NCQ3 95 aa14.86□□□□□ -0.03
VPS28-202ENST00000377348 EPSTI1Q96J88 318 aa14.86□□□□□ -0.03
VPS28-202ENST00000377348 CDK5RAP3Q96JB5 506 aa14.86□□□□□ -0.03
VPS28-202ENST00000377348 CHAMP1Q96JM3 812 aa14.86□□□□□ -0.03
VPS28-202ENST00000377348 AK8Q96MA6 479 aa14.86□□□□□ -0.03
VPS28-202ENST00000377348 FAM161BQ96MY7 647 aa14.86□□□□□ -0.03
VPS28-202ENST00000377348 GCOM2Q9BZD3 368 aaPredicted RBP14.86□□□□□ -0.03
VPS28-202ENST00000377348 POLR3FQ9H1D9 316 aaPredicted RBP14.86□□□□□ -0.03
VPS28-202ENST00000377348 NKX2-4Q9H2Z4 354 aa14.86□□□□□ -0.03
VPS28-202ENST00000377348 DNM3Q9UQ16 869 aa14.86□□□□□ -0.03
VPS28-202ENST00000377348 SRPRBQ9Y5M8 271 aaKnown RBP14.86□□□□□ -0.03
VPS28-202ENST00000377348 GPR182O15218 404 aa14.85□□□□□ -0.03
VPS28-202ENST00000377348 ARHGEF15O94989 841 aa14.85□□□□□ -0.03
VPS28-202ENST00000377348 GJB5O95377 273 aa14.85□□□□□ -0.03
VPS28-202ENST00000377348 EYA4O95677 639 aa14.85□□□□□ -0.03
VPS28-202ENST00000377348 CYP11B2P19099 503 aa14.85□□□□□ -0.03
VPS28-202ENST00000377348 GLRA2P23416 452 aa14.85□□□□□ -0.03
VPS28-202ENST00000377348 ARL2P36404 184 aa14.85□□□□□ -0.03
VPS28-202ENST00000377348 UBA7P41226 1012 aa14.85□□□□□ -0.03
VPS28-202ENST00000377348 CDC42EP1Q00587 391 aa14.85□□□□□ -0.03
VPS28-202ENST00000377348 DNM1Q05193 864 aaKnown RBP14.85□□□□□ -0.03
VPS28-202ENST00000377348 CAPSQ13938 189 aa14.85□□□□□ -0.03
VPS28-202ENST00000377348 RAB30Q15771 203 aa14.85□□□□□ -0.03
VPS28-202ENST00000377348 TMEM119Q4V9L6 283 aa14.85□□□□□ -0.03
VPS28-202ENST00000377348 ZNF710Q8N1W2 664 aa14.85□□□□□ -0.03
VPS28-202ENST00000377348 RNF149Q8NC42 400 aa14.85□□□□□ -0.03
VPS28-202ENST00000377348 LRRC15Q8TF66 581 aa14.85□□□□□ -0.03
VPS28-202ENST00000377348 TIFAQ96CG3 184 aa14.85□□□□□ -0.03
VPS28-202ENST00000377348 ZBED2Q9BTP6 218 aa14.85□□□□□ -0.03
VPS28-202ENST00000377348 FTHL17Q9BXU8 183 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms