RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 STXBP2Q15833 593 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 FBXO11Q86XK2 927 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 MFN1Q8IWA4 741 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 P2RX5Q93086 422 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 MRPL1Q9BYD6 325 aaKnown RBP12.38□□□□□ -0.43
VPS13A-205ENST00000376636 SAYSD1Q9NPB0 183 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 CFAP43Q8NDM7 1665 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 UHRF1BP1Q6BDS2 1440 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 PRPF4O43172 522 aaKnown RBP eCLIP12.38□□□□□ -0.432e-6■■□□□ 14
VPS13A-205ENST00000376636 ATXN8OSP0DMR3 200 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 PPP2R2AP63151 447 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 NAALADL2Q58DX5 795 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 SARM1Q6SZW1 724 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 PLA2G4DQ86XP0 818 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 ELMOD1Q8N336 334 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 CYGBQ8WWM9 190 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 ZNF408Q9H9D4 720 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 ME3Q16798 604 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 LRRIQ3A6PVS8 624 aaPredicted RBP12.38□□□□□ -0.43
VPS13A-205ENST00000376636 NDUFA10O95299 355 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 OLFML2BQ68BL8 750 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 SCFD1Q8WVM8 642 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 EME1Q96AY2 570 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 THAP9Q9H5L6 903 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.38□□□□□ -0.43
VPS13A-205ENST00000376636 hCG_1984214I3L0E3 225 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 JAK2O60674 1132 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 ZNF18P17022 549 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 CLEC4FQ8N1N0 589 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 TNNQ9UQP3 1299 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 LRRC63Q05C16 580 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 ADCK5Q3MIX3 580 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 CCDC134Q9H6E4 229 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 EPS8L2Q9H6S3 715 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 RGL1Q9NZL6 768 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 PNMA6AP0CW24 399 aaPredicted RBP12.37□□□□□ -0.43
VPS13A-205ENST00000376636 APOA5Q6Q788 366 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 HSPH1Q92598 858 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 RMDN1Q96DB5 314 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 HINFPQ9BQA5 517 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 POTEFA5A3E0 1075 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 H0YIN7 160 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 HSPA13P48723 471 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 SLC7A5Q01650 507 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 DDIASQ8IXT1 998 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 EGFL8Q99944 293 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 CALB1P05937 261 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 C16orf89Q6UX73 402 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 LRRC31Q6UY01 552 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 FANCEQ9HB96 536 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 TRIM16LQ309B1 348 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 FAM47EQ6ZV65 393 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 LARGE2Q8N3Y3 721 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 PRUNE1Q86TP1 453 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 CASS4Q9NQ75 786 aa12.37□□□□□ -0.43
VPS13A-205ENST00000376636 H7C0S8 307 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 BIRC5O15392 142 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 NLRP11P59045 1033 aaKnown RBP12.36□□□□□ -0.43
VPS13A-205ENST00000376636 ZBED6P86452 979 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 FASTKD5Q7L8L6 764 aaKnown RBP12.36□□□□□ -0.43
VPS13A-205ENST00000376636 POLR3EQ9NVU0 708 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 FAM129AQ9BZQ8 928 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 WWP1Q9H0M0 922 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 CYP4F11Q9HBI6 524 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 SCN3BQ9NY72 215 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 IFT140Q96RY7 1462 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 HOXB7P09629 217 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 ARFIP2P53365 341 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 ZNF577Q9BSK1 485 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 SLC7A5P2Q9GIP4 190 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 PIK3C2GO75747 1445 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 KLRF2D3W0D1 207 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 TRIP13Q15645 432 aaPredicted RBP12.36□□□□□ -0.43
VPS13A-205ENST00000376636 DEPDC7Q96QD5 511 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 CARMIL3Q8ND23 1372 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 ZNF839A8K0R7 811 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 AP3B1O00203 1094 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 TERF2Q15554 542 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 DNAL1Q4LDG9 190 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 GPATCH4Q5T3I0 446 aaKnown RBP12.36□□□□□ -0.43
VPS13A-205ENST00000376636 ITPRIPL1Q6GPH6 555 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 FAM173BQ6P4H8 233 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 CCDC149Q6ZUS6 474 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 SMARCAD1Q9H4L7 1026 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 PRKAG2Q9UGJ0 569 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 AP4S1Q9Y587 144 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 PI4K2BG5E9Z4 385 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 PFKFB2O60825 505 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 RAPGEF3O95398 923 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 KRT77Q7Z794 578 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 MAPKAPK5Q8IW41 473 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 ANKRD13CQ8N6S4 541 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 PNMA1Q8ND90 353 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 CMTM5Q96DZ9 223 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 PCDHA7Q9UN72 937 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 FTCDO95954 541 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 NNMTP40261 264 aa12.36□□□□□ -0.43
VPS13A-205ENST00000376636 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.36□□□□□ -0.43
VPS13A-205ENST00000376636 FARP1Q9Y4F1 1045 aaPredicted RBP12.36□□□□□ -0.43
VPS13A-205ENST00000376636 CCDC195A0A1B0GUA6 201 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms