RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 TJP3O95049 919 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 UBE3AQ05086 875 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 RASGRF1Q13972 1273 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 CYFIP1Q7L576 1253 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 LZICQ8WZA0 190 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 ARL8AQ96BM9 186 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 STRIP2Q9ULQ0 834 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 PCDHA6Q9UN73 950 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 PCDHA8Q9Y5H6 950 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 MTMR1Q13613 665 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 ZNF699Q32M78 642 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 FAM167BQ9BTA0 163 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 COPRSQ9NQ92 184 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 KLHL11Q9NVR0 708 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 M0QYV0 167 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 ABCC10Q5T3U5 1492 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 WDR48Q8TAF3 677 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 OCM2P0CE71 109 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 OCMP0CE72 109 aaPredicted RBP14.65□□□□□ -0.06
COL4A1-201ENST00000375820 GCFC2P16383 781 aaKnown RBP14.65□□□□□ -0.06
COL4A1-201ENST00000375820 ZNF568Q3ZCX4 644 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 SAAL1Q96ER3 474 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 GGT7Q9UJ14 662 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 FAM135BQ49AJ0 1406 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 DENND3A2RUS2 1198 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 E5RI56 91 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 PRR29P0C7W0 189 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 PAMP19021 973 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 C1orf146Q5VVC0 180 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 EPM2AIP1Q7L775 607 aaPredicted RBP14.65□□□□□ -0.06
COL4A1-201ENST00000375820 EGFL8Q99944 293 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 SIK2Q9H0K1 926 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 ING2Q9H160 280 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 CASS4Q9NQ75 786 aa14.65□□□□□ -0.06
COL4A1-201ENST00000375820 ATP10DQ9P241 1426 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 NEDD4P46934 1319 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 CCDC78A2IDD5 438 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 PRPF3O43395 683 aaKnown RBP14.64□□□□□ -0.07
COL4A1-201ENST00000375820 SLC9A5Q14940 896 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 C16orf87Q6PH81 154 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 PPM1NQ8N819 430 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 DHX38Q92620 1227 aaKnown RBP14.64□□□□□ -0.07
COL4A1-201ENST00000375820 CNOT10Q9H9A5 744 aaKnown RBP14.64□□□□□ -0.07
COL4A1-201ENST00000375820 SKIP12755 728 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 FBXO38Q6PIJ6 1188 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 RBM46Q8TBY0 533 aaKnown RBP14.64□□□□□ -0.07
COL4A1-201ENST00000375820 NRBF2Q96F24 287 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 TRIM55Q9BYV6 548 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 ZFP69BQ9UJL9 534 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 TMEM247A6NEH6 219 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 CLDN3O15551 220 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 PCP11498 1178 aaKnown RBP14.64□□□□□ -0.07
COL4A1-201ENST00000375820 TAS2R42Q7RTR8 314 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 ZFYVE19Q96K21 471 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 FAM95CA0A1B0GW59 222 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 LRRC53A6NM62 1247 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 PRPF4O43172 522 aaKnown RBP eCLIP14.64□□□□□ -0.07
COL4A1-201ENST00000375820 MKRN4PQ13434 485 aaPredicted RBP14.64□□□□□ -0.07
COL4A1-201ENST00000375820 C6orf118Q5T5N4 469 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 CCHCR1Q8TD31 782 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 TRIM15Q9C019 465 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 NDFIP2Q9NV92 336 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 FGFR1OP2Q9NVK5 253 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 DFFAO00273 331 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 SEC24DO94855 1032 aaPredicted RBP14.64□□□□□ -0.07
COL4A1-201ENST00000375820 THEM5Q8N1Q8 247 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 SLC44A5Q8NCS7 719 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 OXER1Q8TDS5 423 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 NEUROG2Q9H2A3 272 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 HDAC6Q9UBN7 1215 aa14.64□□□□□ -0.07
COL4A1-201ENST00000375820 KIF24Q5T7B8 1368 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 RECQLP46063 649 aaPredicted RBP14.63□□□□□ -0.07
COL4A1-201ENST00000375820 IREB2P48200 963 aaKnown RBP14.63□□□□□ -0.07
COL4A1-201ENST00000375820 RESTQ13127 1097 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 SUSD4Q5VX71 490 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 ULK4Q96C45 1275 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 SYNDIG1Q9H7V2 258 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 SLC24A3Q9HC58 644 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 APOBEC2Q9Y235 224 aaKnown RBP14.63□□□□□ -0.07
COL4A1-201ENST00000375820 UBE4BO95155 1302 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 COPS2P61201 443 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 NFRKBQ6P4R8 1299 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 NLRP10Q86W26 655 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 NUP85Q9BW27 656 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 MAST1Q9Y2H9 1570 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 GGCXP38435 758 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 KIAA1755Q5JYT7 1200 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 LMBRD2Q68DH5 695 aaPredicted RBP14.63□□□□□ -0.07
COL4A1-201ENST00000375820 DDIASQ8IXT1 998 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 E2F8A0AVK6 867 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 MFAP3LO75121 409 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 CIITAP33076 1130 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 MAGOHP61326 146 aaKnown RBP14.63□□□□□ -0.07
COL4A1-201ENST00000375820 LCP1P13796 627 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 LTKP29376 864 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 ADCY2Q08462 1091 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 PSMD2Q13200 908 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 SPARCL1Q14515 664 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 SH3KBP1Q96B97 665 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 VPS39Q96JC1 886 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms