RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 BMP3P12645 472 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 KRT4P19013 534 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 RC3H1Q5TC82 1133 aaKnown RBP10.87□□□□□ -0.67
CLIP1-202ENST00000358808 TTLL6Q8N841 843 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 FBXL5Q9UKA1 691 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 PCDHGB4Q9UN71 923 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 ZNF197O14709 1029 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 ORC4O43929 436 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 HUS1O60921 280 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 IMPDH2P12268 514 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 SYTL3Q4VX76 610 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 CENPUQ71F23 418 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 FAM133AQ8N9E0 248 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 IL17REQ8NFR9 667 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 CLIC6Q96NY7 704 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.87□□□□□ -0.67
CLIP1-202ENST00000358808 MAGEF1Q9HAY2 307 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 STRIP2Q9ULQ0 834 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 ZBTB1Q9Y2K1 713 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 PREX1Q8TCU6 1659 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 MED23Q9ULK4 1368 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 UBA6A0AVT1 1052 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-202ENST00000358808 F5H423 210 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-202ENST00000358808 CPB1P15086 417 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 POU5F1BQ06416 359 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 PKP1Q13835 747 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 TUBGCP2Q9BSJ2 902 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 PIM2Q9P1W9 311 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 ATP10DQ9P241 1426 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 DIP2AQ14689 1571 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 GSNP06396 782 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 CCT5P48643 541 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 THNSL1Q8IYQ7 743 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 APPL2Q8NEU8 664 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 DCUN1D1Q96GG9 259 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 LBHD1Q9BQE6 289 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-202ENST00000358808 EPB41L5Q9HCM4 733 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 PCDHA4Q9UN74 947 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 VEPH1Q14D04 833 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 SPATA1Q5VX52 437 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 RASSF3Q86WH2 238 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 SPON2Q9BUD6 331 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 TRPC7Q9HCX4 862 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.87□□□□□ -0.678e-7■■■■□ 22.7
CLIP1-202ENST00000358808 KIAA1468Q9P260 1216 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 MAP10Q9P2G4 905 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 PCDHA5Q9Y5H7 936 aa10.87□□□□□ -0.67
CLIP1-202ENST00000358808 EPN1Q9Y6I3 576 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-202ENST00000358808 MOCS2O96007 188 aaPredicted RBP10.86□□□□□ -0.67
CLIP1-202ENST00000358808 SLFN14P0C7P3 912 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 E2F5Q15329 346 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 EDC3Q96F86 508 aaKnown RBP10.86□□□□□ -0.67
CLIP1-202ENST00000358808 RUBCNLQ9H714 662 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 DMAP1Q9NPF5 467 aaPredicted RBP10.86□□□□□ -0.67
CLIP1-202ENST00000358808 PRR36Q9H6K5 1346 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 KPNA7A9QM74 516 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 PGRMC1O00264 195 aaKnown RBP10.86□□□□□ -0.67
CLIP1-202ENST00000358808 SPAG7O75391 227 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 CCDC159P0C7I6 412 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 ZNF667Q5HYK9 610 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 USP17L3A6NCW0 530 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 USP17L4A6NCW7 530 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 PRR23D1E9PI22 279 aaPredicted RBP10.86□□□□□ -0.67
CLIP1-202ENST00000358808 ENC1O14682 589 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 APOA4P06727 396 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 PRR23D2P0DMB1 279 aaPredicted RBP10.86□□□□□ -0.67
CLIP1-202ENST00000358808 SLC9A1P19634 815 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 MXI1P50539 228 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 MRPL28Q13084 256 aaKnown RBP10.86□□□□□ -0.67
CLIP1-202ENST00000358808 USP17L1Q7RTZ2 530 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 ST13P4Q8IZP2 240 aaPredicted RBP10.86□□□□□ -0.67
CLIP1-202ENST00000358808 PDIK1LQ8N165 341 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 CEP70Q8NHQ1 597 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 DNAJC17Q9NVM6 304 aaKnown RBP10.86□□□□□ -0.67
CLIP1-202ENST00000358808 TRAF3IP3Q9Y228 551 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 PER1O15534 1290 aaPredicted RBP10.86□□□□□ -0.67
CLIP1-202ENST00000358808 GUCA1CO95843 209 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 KCNA2P16389 499 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 EIF2AK2P19525 551 aaKnown RBP10.86□□□□□ -0.67
CLIP1-202ENST00000358808 COPS2P61201 443 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 TMPRSS15P98073 1019 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 DEUP1Q05D60 604 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 MORF4L2Q15014 288 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 SLC27A3Q5K4L6 730 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 TTC17Q96AE7 1141 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 VPS11Q9H270 941 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 HPS4Q9NQG7 708 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 TOPORSQ9NS56 1045 aaPredicted RBP10.86□□□□□ -0.67
CLIP1-202ENST00000358808 CACNA2D2Q9NY47 1150 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 GDAQ9Y2T3 454 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 LAD1O00515 517 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 ZNF500O60304 480 aaPredicted RBP10.86□□□□□ -0.67
CLIP1-202ENST00000358808 NEK2P51955 445 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 TNFAIP2Q03169 654 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 C2orf54Q08AI8 447 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 PDCLQ13371 301 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 FSCBQ5H9T9 825 aa10.86□□□□□ -0.67
CLIP1-202ENST00000358808 DDX42Q86XP3 938 aaKnown RBP eCLIP10.86□□□□□ -0.67
CLIP1-202ENST00000358808 IFNLR1Q8IU57 520 aaPredicted RBP10.86□□□□□ -0.67
CLIP1-202ENST00000358808 K7ERI5 159 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms