RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 RPS6KA4O75676 772 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 CDKL2Q92772 493 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 RNF31Q96EP0 1072 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 LLPHQ9BRT6 129 aaKnown RBP7.88□□□□□ -1.15
VPS13A-202ENST00000357409 DNAJC12Q9UKB3 198 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 URB2Q14146 1524 aaKnown RBP7.88□□□□□ -1.15
VPS13A-202ENST00000357409 TRIM49P0CI25 452 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 TRIM49CP0CI26 452 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 MFSD14CQ5VZR4 134 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 CYP4F11Q9HBI6 524 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 KIAA0586Q9BVV6 1533 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 CCL15-CCL14A0A0B4J2E2 113 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 PER1O15534 1290 aaPredicted RBP7.88□□□□□ -1.15
VPS13A-202ENST00000357409 MAPK9P45984 424 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 YWHAEP62258 255 aaKnown RBP7.88□□□□□ -1.15
VPS13A-202ENST00000357409 IFT88Q13099 833 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 TRIM14Q14142 442 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 CCL15Q16663 113 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 POM121L1PQ3SYA9 428 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 SPDYAQ5MJ70 313 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 CCDC17Q96LX7 622 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 NHEJ1Q9H9Q4 299 aaPredicted RBP7.88□□□□□ -1.15
VPS13A-202ENST00000357409 INTS9Q9NV88 658 aaKnown RBP7.88□□□□□ -1.15
VPS13A-202ENST00000357409 FBXO28Q9NVF7 368 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 HPCAL4Q9UM19 191 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 TRPM2O94759 1503 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 SEMA3EO15041 775 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 KCNJ6P48051 423 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 RASSF2P50749 326 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 HIF1AQ16665 826 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 NCLNQ969V3 563 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 EIF4A3P38919 411 aaKnown RBP7.88□□□□□ -1.15
VPS13A-202ENST00000357409 PAK2Q13177 524 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 RBBP7Q16576 425 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 KIZQ2M2Z5 673 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 RC3H1Q5TC82 1133 aaKnown RBP7.88□□□□□ -1.15
VPS13A-202ENST00000357409 RAB17Q9H0T7 212 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 METP08581 1390 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 ITIH6Q6UXX5 1313 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 KIF3CO14782 793 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 ZBED1O96006 694 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 PHBP35232 272 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 ARL4DP49703 201 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 ZNF667Q5HYK9 610 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 TBC1D10CQ8IV04 446 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 C1orf54Q8WWF1 131 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 RSRC1Q96IZ7 334 aaKnown RBP7.88□□□□□ -1.15
VPS13A-202ENST00000357409 AGBL1Q96MI9 1066 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 FAM49BQ9NUQ9 324 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 CNOT8Q9UFF9 292 aaKnown RBP7.88□□□□□ -1.15
VPS13A-202ENST00000357409 HACL1Q9UJ83 578 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 PRR12Q9ULL5 1215 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 LAMC3Q9Y6N6 1575 aa7.88□□□□□ -1.15
VPS13A-202ENST00000357409 PSMD14O00487 310 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 PNMA6AP0CW24 399 aaPredicted RBP7.87□□□□□ -1.15
VPS13A-202ENST00000357409 HOXD10P28358 340 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 ASPRV1Q53RT3 343 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 RAB44Q7Z6P3 723 aaPredicted RBP7.87□□□□□ -1.15
VPS13A-202ENST00000357409 RBM23Q86U06 439 aaKnown RBP7.87□□□□□ -1.15
VPS13A-202ENST00000357409 RGL2O15211 777 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 ZNF853P0CG23 659 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 HLA-DPA1P20036 260 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 GBP1P32455 592 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 MYO1EQ12965 1108 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 MAP7Q14244 749 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 MAP7D3Q8IWC1 876 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 KCNV2Q8TDN2 545 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 DCTN4Q9UJW0 460 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 THOC2Q8NI27 1593 aaKnown RBP7.87□□□□□ -1.15
VPS13A-202ENST00000357409 RNF40O75150 1001 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 ASNSP08243 561 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 SESN2P58004 480 aaPredicted RBP7.87□□□□□ -1.15
VPS13A-202ENST00000357409 CCNYL1Q8N7R7 359 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 TEKT4Q8WW24 435 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 NUDT5Q9UKK9 219 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 ADGRA2Q96PE1 1338 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 HNRNPCL2B2RXH8 293 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 HNRNPCL1O60812 293 aaKnown RBP7.87□□□□□ -1.15
VPS13A-202ENST00000357409 ART3Q13508 389 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 ARMCX2Q7L311 632 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 PYROXD1Q8WU10 500 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 SPACA7Q96KW9 195 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 ELAC2Q9BQ52 826 aaKnown RBP7.87□□□□□ -1.15
VPS13A-202ENST00000357409 COA1Q9GZY4 146 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 SAYSD1Q9NPB0 183 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 PCF11O94913 1555 aaKnown RBP7.87□□□□□ -1.15
VPS13A-202ENST00000357409 H0Y3Z8 333 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 ZNF699Q32M78 642 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 SPATA1Q5VX52 437 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 SPATA2LQ8IUW3 424 aaPredicted RBP7.87□□□□□ -1.15
VPS13A-202ENST00000357409 B4GALNT2Q8NHY0 566 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 ZFYVE19Q96K21 471 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 MED23Q9ULK4 1368 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 GNA14O95837 355 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 GMPSP49915 693 aaPredicted RBP7.87□□□□□ -1.15
VPS13A-202ENST00000357409 MXI1P50539 228 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 ZC2HC1CQ53FD0 456 aaPredicted RBP7.87□□□□□ -1.15
VPS13A-202ENST00000357409 MS4A14Q96JA4 679 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 MCM8Q9UJA3 840 aa7.87□□□□□ -1.15
VPS13A-202ENST00000357409 SNX2O60749 519 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms