RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 CTTNQ14247 550 aaKnown RBP20.6■□□□□ 0.89
CLN3-202ENST00000355477 C4orf19Q8IY42 314 aa20.6■□□□□ 0.89
CLN3-202ENST00000355477 ZNF710Q8N1W2 664 aa20.6■□□□□ 0.89
CLN3-202ENST00000355477 CLP1Q92989 425 aaKnown RBP20.6■□□□□ 0.89
CLN3-202ENST00000355477 TTC12Q9H892 705 aaPredicted RBP20.6■□□□□ 0.89
CLN3-202ENST00000355477 DKC1O60832 514 aaKnown RBP eCLIP20.59■□□□□ 0.89
CLN3-202ENST00000355477 CSDE1O75534 798 aaKnown RBP20.59■□□□□ 0.89
CLN3-202ENST00000355477 STAG3L1P0CL83 205 aa20.59■□□□□ 0.89
CLN3-202ENST00000355477 DARSP14868 501 aaKnown RBP20.59■□□□□ 0.89
CLN3-202ENST00000355477 FGFR4P22455 802 aa20.59■□□□□ 0.89
CLN3-202ENST00000355477 MCM7P33993 719 aa20.59■□□□□ 0.89
CLN3-202ENST00000355477 BMPR1AP36894 532 aa20.59■□□□□ 0.89
CLN3-202ENST00000355477 CYP4A11Q02928 519 aa20.59■□□□□ 0.89
CLN3-202ENST00000355477 SKIV2LQ15477 1246 aaKnown RBP20.59■□□□□ 0.89
CLN3-202ENST00000355477 FAM43BQ6ZT52 329 aaPredicted RBP20.59■□□□□ 0.89
CLN3-202ENST00000355477 SLC24A5Q71RS6 500 aa20.59■□□□□ 0.89
CLN3-202ENST00000355477 FAM184AQ8NB25 1140 aa20.59■□□□□ 0.89
CLN3-202ENST00000355477 ATXN2LQ8WWM7 1075 aaKnown RBP20.59■□□□□ 0.89
CLN3-202ENST00000355477 NLRP7Q8WX94 980 aa20.59■□□□□ 0.89
CLN3-202ENST00000355477 EIF2AK1Q9BQI3 630 aaKnown RBP20.59■□□□□ 0.89
CLN3-202ENST00000355477 FOXP1Q9H334 677 aaPredicted RBP20.59■□□□□ 0.89
CLN3-202ENST00000355477 SUCLA2Q9P2R7 463 aaPredicted RBP20.59■□□□□ 0.89
CLN3-202ENST00000355477 LRFN2Q9ULH4 789 aa20.59■□□□□ 0.89
CLN3-202ENST00000355477 MRPL42Q9Y6G3 142 aaKnown RBP20.59■□□□□ 0.89
CLN3-202ENST00000355477 YWHABP31946 246 aaKnown RBP20.58■□□□□ 0.89
CLN3-202ENST00000355477 CTNNB1P35222 781 aa20.58■□□□□ 0.89
CLN3-202ENST00000355477 DNM2P50570 870 aa20.58■□□□□ 0.89
CLN3-202ENST00000355477 FAM189BP81408 668 aa20.58■□□□□ 0.89
CLN3-202ENST00000355477 TFF2Q03403 129 aa20.58■□□□□ 0.89
CLN3-202ENST00000355477 PAN2Q504Q3 1202 aaKnown RBP20.58■□□□□ 0.89
CLN3-202ENST00000355477 KSR1Q8IVT5 923 aa20.58■□□□□ 0.89
CLN3-202ENST00000355477 TPH2Q8IWU9 490 aa20.58■□□□□ 0.89
CLN3-202ENST00000355477 CMTR2Q8IYT2 770 aaKnown RBP20.58■□□□□ 0.89
CLN3-202ENST00000355477 CEP170P1Q96L14 293 aa20.58■□□□□ 0.89
CLN3-202ENST00000355477 SCLT1Q96NL6 688 aa20.58■□□□□ 0.89
CLN3-202ENST00000355477 HSD17B14Q9BPX1 270 aa20.58■□□□□ 0.89
CLN3-202ENST00000355477 ZSWIM4Q9H7M6 989 aa20.58■□□□□ 0.89
CLN3-202ENST00000355477 UPF2Q9HAU5 1272 aaKnown RBP20.58■□□□□ 0.89
CLN3-202ENST00000355477 C1orf112Q9NSG2 853 aa20.58■□□□□ 0.89
CLN3-202ENST00000355477 PCDHB7Q9Y5E2 793 aa20.58■□□□□ 0.89
CLN3-202ENST00000355477 A0A087WZ62 844 aa20.57■□□□□ 0.88
CLN3-202ENST00000355477 C5orf67F2Z3F1 127 aa20.57■□□□□ 0.88
CLN3-202ENST00000355477 ST18O60284 1047 aa20.57■□□□□ 0.88
CLN3-202ENST00000355477 ZNF174Q15697 407 aa20.57■□□□□ 0.88
CLN3-202ENST00000355477 FAM102BQ5T8I3 360 aa20.57■□□□□ 0.88
CLN3-202ENST00000355477 RHPN2Q8IUC4 686 aa20.57■□□□□ 0.88
CLN3-202ENST00000355477 MRPL38Q96DV4 380 aaKnown RBP20.57■□□□□ 0.88
CLN3-202ENST00000355477 TMX3Q96JJ7 454 aa20.57■□□□□ 0.88
CLN3-202ENST00000355477 TBC1D32Q96NH3 1257 aa20.57■□□□□ 0.88
CLN3-202ENST00000355477 ASB2Q96Q27 587 aa20.57■□□□□ 0.88
CLN3-202ENST00000355477 FDXACB1Q9BRP7 624 aaPredicted RBP20.57■□□□□ 0.88
CLN3-202ENST00000355477 DHX33Q9H6R0 707 aaKnown RBP20.57■□□□□ 0.88
CLN3-202ENST00000355477 PLXNA4Q9HCM2 1894 aa20.56■□□□□ 0.88
CLN3-202ENST00000355477 RB1P06400 928 aa20.56■□□□□ 0.88
CLN3-202ENST00000355477 MRPS5P82675 430 aaKnown RBP20.56■□□□□ 0.88
CLN3-202ENST00000355477 TJAP1Q5JTD0 557 aa20.56■□□□□ 0.88
CLN3-202ENST00000355477 TMEM143Q96AN5 459 aa20.56■□□□□ 0.88
CLN3-202ENST00000355477 GCOM2Q9BZD3 368 aaPredicted RBP20.56■□□□□ 0.88
CLN3-202ENST00000355477 BMP2KQ9NSY1 1161 aaPredicted RBP20.56■□□□□ 0.88
CLN3-202ENST00000355477 POTEMA6NI47 508 aa20.55■□□□□ 0.88
CLN3-202ENST00000355477 GRM6O15303 877 aa20.55■□□□□ 0.88
CLN3-202ENST00000355477 POLGP54098 1239 aaPredicted RBP20.55■□□□□ 0.88
CLN3-202ENST00000355477 CDC42EP1Q00587 391 aa20.55■□□□□ 0.88
CLN3-202ENST00000355477 XKR9Q5GH70 373 aa20.55■□□□□ 0.88
CLN3-202ENST00000355477 OTUD6AQ7L8S5 288 aa20.55■□□□□ 0.88
CLN3-202ENST00000355477 NOSTRINQ8IVI9 506 aa20.55■□□□□ 0.88
CLN3-202ENST00000355477 SLC7A3Q8WY07 619 aa20.55■□□□□ 0.88
CLN3-202ENST00000355477 JPH2Q9BR39 696 aaPredicted RBP20.55■□□□□ 0.88
CLN3-202ENST00000355477 RWDD3Q9Y3V2 267 aa20.55■□□□□ 0.88
CLN3-202ENST00000355477 MUC3AQ02505 3323 aa20.55■□□□□ 0.88
CLN3-202ENST00000355477 A0A087WWV3 80 aa20.54■□□□□ 0.88
CLN3-202ENST00000355477 LYPLA2O95372 231 aa20.54■□□□□ 0.88
CLN3-202ENST00000355477 FGFR1P11362 822 aa20.54■□□□□ 0.88
CLN3-202ENST00000355477 ZSCAN20P17040 1043 aaPredicted RBP20.54■□□□□ 0.88
CLN3-202ENST00000355477 U2AF2P26368 475 aaKnown RBP eCLIP20.54■□□□□ 0.88
CLN3-202ENST00000355477 RFC5P40937 340 aa20.54■□□□□ 0.88
CLN3-202ENST00000355477 NBR1Q14596 966 aa20.54■□□□□ 0.88
CLN3-202ENST00000355477 PTPROQ16827 1216 aa20.54■□□□□ 0.88
CLN3-202ENST00000355477 ZNF410Q86VK4 478 aa20.54■□□□□ 0.88
CLN3-202ENST00000355477 PRPF31Q8WWY3 499 aaKnown RBP20.54■□□□□ 0.88
CLN3-202ENST00000355477 NLRP4Q96MN2 994 aa20.54■□□□□ 0.88
CLN3-202ENST00000355477 IFT122Q9HBG6 1241 aa20.54■□□□□ 0.88
CLN3-202ENST00000355477 TMEM161AQ9NX61 479 aa20.54■□□□□ 0.88
CLN3-202ENST00000355477 PPME1Q9Y570 386 aa20.54■□□□□ 0.88
CLN3-202ENST00000355477 TBKBP1A7MCY6 615 aa20.53■□□□□ 0.88
CLN3-202ENST00000355477 SPATA31C1P0DKV0 1188 aa20.53■□□□□ 0.88
CLN3-202ENST00000355477 GNL2Q13823 731 aaKnown RBP20.53■□□□□ 0.88
CLN3-202ENST00000355477 EMC2Q15006 297 aa20.53■□□□□ 0.88
CLN3-202ENST00000355477 TTC38Q5R3I4 469 aa20.53■□□□□ 0.88
CLN3-202ENST00000355477 HLA-CQ95604 372 aa20.53■□□□□ 0.88
CLN3-202ENST00000355477 C11orf84Q9BUA3 381 aaPredicted RBP20.53■□□□□ 0.88
CLN3-202ENST00000355477 ELAC1Q9H777 363 aaKnown RBP20.53■□□□□ 0.88
CLN3-202ENST00000355477 ATP6V0A4Q9HBG4 840 aa20.53■□□□□ 0.88
CLN3-202ENST00000355477 ALG13Q9NP73 1137 aaKnown RBP20.53■□□□□ 0.88
CLN3-202ENST00000355477 RNF19AQ9NV58 838 aa20.53■□□□□ 0.88
CLN3-202ENST00000355477 RNF216Q9NWF9 866 aaPredicted RBP20.53■□□□□ 0.88
CLN3-202ENST00000355477 HCSTQ9UBK5 93 aa20.53■□□□□ 0.88
CLN3-202ENST00000355477 COG5Q9UP83 839 aa20.53■□□□□ 0.88
CLN3-202ENST00000355477 COL4A3BPQ9Y5P4 624 aa20.53■□□□□ 0.88
CLN3-202ENST00000355477 SRGAP2CP0DJJ0 459 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms