RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 H0Y626 953 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 RPS6KA4O75676 772 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 TRIM16O95361 564 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 CHEK2O96017 543 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 RPSAP08865 295 aaKnown RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 KRT15P19012 456 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 NFIAQ12857 509 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 HADHQ16836 314 aaKnown RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 CTU1Q7Z7A3 348 aaKnown RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 PALB2Q86YC2 1186 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 UCMAQ8WVF2 138 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 GLMNQ92990 594 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 CCDC17Q96LX7 622 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 KDM4CQ9H3R0 1056 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 FAM204AQ9H8W3 233 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 PI4KBQ9UBF8 816 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 VPS9D1Q9Y2B5 631 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 PCDHA1Q9Y5I3 950 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 BAZ2BQ9UIF8 2168 aaKnown RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 TPRP12270 2363 aaKnown RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 PNMA8CA0A1B0GUJ8 204 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 IGF2BP3O00425 579 aaKnown RBP eCLIP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 CHL1O00533 1208 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 NCK2O43639 380 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 ZNF500O60304 480 aaPredicted RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 CCND2P30279 289 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 HSPA9P38646 679 aaKnown RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 NSFP46459 744 aaKnown RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 SESN3P58005 492 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 MECOMQ03112 1051 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 SLC39A6Q13433 755 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 PHKG1Q16816 387 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 LRCH2Q5VUJ6 765 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 KRBA2Q6ZNG9 492 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 IFNL1Q8IU54 200 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 GPC2Q8N158 579 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 LRRC43Q8N309 656 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 RIBC1Q8N443 379 aaPredicted RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 RMND5BQ96G75 393 aaPredicted RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 NAPGQ99747 312 aaPredicted RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 EMILIN2Q9BXX0 1053 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 NEK6Q9HC98 313 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 EPB41L3Q9Y2J2 1087 aaPredicted RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 PFASO15067 1338 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 RNASEH1O60930 286 aaKnown RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 GJB1P08034 283 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 C8orf34Q49A92 452 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 MDH1BQ5I0G3 518 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 PPP2R2DQ66LE6 453 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 MTERF3Q96E29 417 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 GSDMAQ96QA5 445 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 IFIH1Q9BYX4 1025 aaKnown RBP3.52□□□□□ -1.85
CSMD3-202ENST00000339701 VIPAS39Q9H9C1 493 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 KLHL3Q9UH77 587 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 SLC4A4Q9Y6R1 1079 aa3.52□□□□□ -1.85
CSMD3-202ENST00000339701 LDOC1O95751 146 aaPredicted RBP3.51□□□□□ -1.85
CSMD3-202ENST00000339701 LRG1P02750 347 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 ZSCAN22P10073 491 aaPredicted RBP3.51□□□□□ -1.85
CSMD3-202ENST00000339701 AP1S2P56377 157 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 FBXW4P57775 412 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 FSCBQ5H9T9 825 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 HECTD3Q5T447 861 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 SLAIN1Q8ND83 568 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 GPRC5AQ8NFJ5 357 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 PPP1R14BQ96C90 147 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 CAPNS2Q96L46 248 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 FOCADQ5VW36 1801 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 RIC1Q4ADV7 1423 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 MYO7AQ13402 2215 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 ITGB4P16144 1822 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 AKR1B15C9JRZ8 316 aaPredicted RBP3.51□□□□□ -1.85
CSMD3-202ENST00000339701 GGPS1O95749 300 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 LONP1P36776 959 aaKnown RBP3.51□□□□□ -1.85
CSMD3-202ENST00000339701 STAT6P42226 847 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 PPIL4Q8WUA2 492 aaKnown RBP eCLIP3.51□□□□□ -1.85
CSMD3-202ENST00000339701 TBC1D32Q96NH3 1257 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 HHATLQ9HCP6 504 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 USTQ9Y2C2 406 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 UTP18Q9Y5J1 556 aaKnown RBP eCLIP3.51□□□□□ -1.85
CSMD3-202ENST00000339701 NUP98P52948 1817 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 SPDYE16A6NNV3 312 aaPredicted RBP3.51□□□□□ -1.85
CSMD3-202ENST00000339701 CYBBP04839 570 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 NUP107P57740 925 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 SPDYE2Q495Y8 402 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 RGMBQ6NW40 437 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 SHQ1Q6PI26 577 aaKnown RBP3.51□□□□□ -1.85
CSMD3-202ENST00000339701 TEX9Q8N6V9 391 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 PRDM16Q9HAZ2 1276 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 PCDHB8Q9UN66 801 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 SUGT1Q9Y2Z0 365 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 SESN1Q9Y6P5 492 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 TNS3Q68CZ2 1445 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 LOC102724159A0A0B4J2E5 919 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 CAPN9O14815 690 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 UPP2O95045 317 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 ANXA11P50995 505 aaKnown RBP3.51□□□□□ -1.85
CSMD3-202ENST00000339701 STAT2P52630 851 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 NAPAP54920 295 aa3.51□□□□□ -1.85
CSMD3-202ENST00000339701 PWP2Q15269 919 aaKnown RBP3.51□□□□□ -1.85
CSMD3-202ENST00000339701 HABP4Q5JVS0 413 aaKnown RBP3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms