RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 INO80BQ9C086 356 aaPredicted RBP15.62■□□□□ 0.09
LIMS1-201ENST00000332345 SEMA6BQ9H3T3 888 aa15.62■□□□□ 0.09
LIMS1-201ENST00000332345 DBR1Q9UK59 544 aaKnown RBP15.62■□□□□ 0.09
LIMS1-201ENST00000332345 ST3GAL5Q9UNP4 418 aa15.62■□□□□ 0.09
LIMS1-201ENST00000332345 MYO9BQ13459 2157 aa15.62■□□□□ 0.09
LIMS1-201ENST00000332345 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.61■□□□□ 0.09
LIMS1-201ENST00000332345 VWA3AA6NCI4 1184 aa15.61■□□□□ 0.09
LIMS1-201ENST00000332345 GJB5O95377 273 aa15.61■□□□□ 0.09
LIMS1-201ENST00000332345 RESTQ13127 1097 aa15.61■□□□□ 0.09
LIMS1-201ENST00000332345 DRP2Q13474 957 aa15.61■□□□□ 0.09
LIMS1-201ENST00000332345 EMC2Q15006 297 aa15.61■□□□□ 0.09
LIMS1-201ENST00000332345 SF3A1Q15459 793 aaKnown RBP15.61■□□□□ 0.09
LIMS1-201ENST00000332345 ZNF410Q86VK4 478 aa15.61■□□□□ 0.09
LIMS1-201ENST00000332345 SPRYD3Q8NCJ5 442 aa15.61■□□□□ 0.09
LIMS1-201ENST00000332345 SNX29Q8TEQ0 813 aa15.61■□□□□ 0.09
LIMS1-201ENST00000332345 TMEM40Q8WWA1 233 aa15.61■□□□□ 0.09
LIMS1-201ENST00000332345 PRPF31Q8WWY3 499 aaKnown RBP15.61■□□□□ 0.09
LIMS1-201ENST00000332345 TMEM143Q96AN5 459 aa15.61■□□□□ 0.09
LIMS1-201ENST00000332345 ZNF576Q9H609 170 aa15.61■□□□□ 0.09
LIMS1-201ENST00000332345 ERVK-5Q9HDB9 667 aa15.61■□□□□ 0.09
LIMS1-201ENST00000332345 KIAA1024Q9UPX6 916 aa15.61■□□□□ 0.09
LIMS1-201ENST00000332345 INSL6Q9Y581 213 aa15.61■□□□□ 0.09
LIMS1-201ENST00000332345 GBF1Q92538 1859 aa15.61■□□□□ 0.09
LIMS1-201ENST00000332345 A0A087WWV3 80 aa15.6■□□□□ 0.09
LIMS1-201ENST00000332345 UPP2O95045 317 aa15.6■□□□□ 0.09
LIMS1-201ENST00000332345 DARSP14868 501 aaKnown RBP15.6■□□□□ 0.09
LIMS1-201ENST00000332345 BECN1Q14457 450 aa15.6■□□□□ 0.09
LIMS1-201ENST00000332345 MXD4Q14582 209 aaPredicted RBP15.6■□□□□ 0.09
LIMS1-201ENST00000332345 FAM117BQ6P1L5 589 aa15.6■□□□□ 0.09
LIMS1-201ENST00000332345 POTEGQ6S5H5 508 aa15.6■□□□□ 0.09
LIMS1-201ENST00000332345 Q7L0L9 218 aa15.6■□□□□ 0.09
LIMS1-201ENST00000332345 KCTD17Q8N5Z5 321 aa15.6■□□□□ 0.09
LIMS1-201ENST00000332345 ZNF668Q96K58 619 aaPredicted RBP15.6■□□□□ 0.09
LIMS1-201ENST00000332345 AK8Q96MA6 479 aa15.6■□□□□ 0.09
LIMS1-201ENST00000332345 TSPYL2Q9H2G4 693 aaPredicted RBP15.6■□□□□ 0.09
LIMS1-201ENST00000332345 NKX2-4Q9H2Z4 354 aa15.6■□□□□ 0.09
LIMS1-201ENST00000332345 ATP6V0A4Q9HBG4 840 aa15.6■□□□□ 0.09
LIMS1-201ENST00000332345 MTMR10Q9NXD2 777 aa15.6■□□□□ 0.09
LIMS1-201ENST00000332345 DNM3Q9UQ16 869 aa15.6■□□□□ 0.09
LIMS1-201ENST00000332345 YBX2Q9Y2T7 364 aaKnown RBP15.6■□□□□ 0.09
LIMS1-201ENST00000332345 COL4A3BPQ9Y5P4 624 aa15.6■□□□□ 0.09
LIMS1-201ENST00000332345 A0A087WZ62 844 aa15.59■□□□□ 0.09
LIMS1-201ENST00000332345 DENND3A2RUS2 1198 aa15.59■□□□□ 0.09
LIMS1-201ENST00000332345 ARHGEF35A5YM69 484 aa15.59■□□□□ 0.09
LIMS1-201ENST00000332345 SRGAP2CP0DJJ0 459 aa15.59■□□□□ 0.09
LIMS1-201ENST00000332345 MYOGP15173 224 aa15.59■□□□□ 0.09
LIMS1-201ENST00000332345 ZSCAN20P17040 1043 aaPredicted RBP15.59■□□□□ 0.09
LIMS1-201ENST00000332345 LAMTOR4Q0VGL1 99 aa15.59■□□□□ 0.09
LIMS1-201ENST00000332345 TMCO2Q7Z6W1 182 aaPredicted RBP15.59■□□□□ 0.09
LIMS1-201ENST00000332345 RTN4RL1Q86UN2 441 aaPredicted RBP15.59■□□□□ 0.09
LIMS1-201ENST00000332345 FAM228AQ86W67 206 aa15.59■□□□□ 0.09
LIMS1-201ENST00000332345 MCPH1Q8NEM0 835 aa15.59■□□□□ 0.09
LIMS1-201ENST00000332345 NLRP4Q96MN2 994 aa15.59■□□□□ 0.09
LIMS1-201ENST00000332345 FAM161BQ96MY7 647 aa15.59■□□□□ 0.09
LIMS1-201ENST00000332345 FDXACB1Q9BRP7 624 aaPredicted RBP15.59■□□□□ 0.09
LIMS1-201ENST00000332345 BMP2KQ9NSY1 1161 aaPredicted RBP15.59■□□□□ 0.09
LIMS1-201ENST00000332345 DDX19AQ9NUU7 478 aaKnown RBP15.59■□□□□ 0.09
LIMS1-201ENST00000332345 TTC3P53804 2025 aa15.59■□□□□ 0.09
LIMS1-201ENST00000332345 SLC26A4O43511 780 aa15.58■□□□□ 0.08
LIMS1-201ENST00000332345 CA3P07451 260 aa15.58■□□□□ 0.08
LIMS1-201ENST00000332345 STAG3L1P0CL83 205 aa15.58■□□□□ 0.08
LIMS1-201ENST00000332345 CDC25AP30304 524 aa15.58■□□□□ 0.08
LIMS1-201ENST00000332345 LONP1P36776 959 aaKnown RBP15.58■□□□□ 0.08
LIMS1-201ENST00000332345 TFDP1Q14186 410 aa15.58■□□□□ 0.08
LIMS1-201ENST00000332345 ECM1Q16610 540 aa15.58■□□□□ 0.08
LIMS1-201ENST00000332345 PPP2R2DQ66LE6 453 aa15.58■□□□□ 0.08
LIMS1-201ENST00000332345 KSR1Q8IVT5 923 aa15.58■□□□□ 0.08
LIMS1-201ENST00000332345 ZNF396Q96N95 335 aaPredicted RBP15.58■□□□□ 0.08
LIMS1-201ENST00000332345 YME1L1Q96TA2 773 aa15.58■□□□□ 0.08
LIMS1-201ENST00000332345 ADAM2Q99965 735 aa15.58■□□□□ 0.08
LIMS1-201ENST00000332345 NT5C3AQ9H0P0 336 aa15.58■□□□□ 0.08
LIMS1-201ENST00000332345 TTYH1Q9H313 450 aaPredicted RBP15.58■□□□□ 0.08
LIMS1-201ENST00000332345 TMX1Q9H3N1 280 aa15.58■□□□□ 0.08
LIMS1-201ENST00000332345 RGS18Q9NS28 235 aa15.58■□□□□ 0.08
LIMS1-201ENST00000332345 C1orf112Q9NSG2 853 aa15.58■□□□□ 0.08
LIMS1-201ENST00000332345 CLIC4Q9Y696 253 aa15.58■□□□□ 0.08
LIMS1-201ENST00000332345 ARID2Q68CP9 1835 aa15.58■□□□□ 0.08
LIMS1-201ENST00000332345 PTPRSQ13332 1948 aa15.58■□□□□ 0.08
LIMS1-201ENST00000332345 PP2D1A8MPX8 630 aa15.57■□□□□ 0.08
LIMS1-201ENST00000332345 RBAK-RBAKDNI3L0D1 243 aa15.57■□□□□ 0.08
LIMS1-201ENST00000332345 USO1O60763 962 aaKnown RBP15.57■□□□□ 0.08
LIMS1-201ENST00000332345 ZSCAN22P10073 491 aaPredicted RBP15.57■□□□□ 0.08
LIMS1-201ENST00000332345 SFPQP23246 707 aaKnown RBP eCLIP15.57■□□□□ 0.08
LIMS1-201ENST00000332345 UBA7P41226 1012 aa15.57■□□□□ 0.08
LIMS1-201ENST00000332345 HTRA4P83105 476 aaPredicted RBP15.57■□□□□ 0.08
LIMS1-201ENST00000332345 POU5F1BQ06416 359 aa15.57■□□□□ 0.08
LIMS1-201ENST00000332345 ZRSR1Q15695 479 aaKnown RBP15.57■□□□□ 0.08
LIMS1-201ENST00000332345 FAM173BQ6P4H8 233 aa15.57■□□□□ 0.08
LIMS1-201ENST00000332345 PADI6Q6TGC4 694 aa15.57■□□□□ 0.08
LIMS1-201ENST00000332345 SLC24A5Q71RS6 500 aa15.57■□□□□ 0.08
LIMS1-201ENST00000332345 SRGAP1Q7Z6B7 1085 aa15.57■□□□□ 0.08
LIMS1-201ENST00000332345 CDK5RAP3Q96JB5 506 aa15.57■□□□□ 0.08
LIMS1-201ENST00000332345 MMTAG2Q9BU76 263 aaKnown RBP15.57■□□□□ 0.08
LIMS1-201ENST00000332345 BHMT2Q9H2M3 363 aa15.57■□□□□ 0.08
LIMS1-201ENST00000332345 IFT122Q9HBG6 1241 aa15.57■□□□□ 0.08
LIMS1-201ENST00000332345 XPNPEP1Q9NQW7 623 aa15.57■□□□□ 0.08
LIMS1-201ENST00000332345 CHST12Q9NRB3 414 aa15.57■□□□□ 0.08
LIMS1-201ENST00000332345 LRFN2Q9ULH4 789 aa15.57■□□□□ 0.08
LIMS1-201ENST00000332345 PCDHB7Q9Y5E2 793 aa15.57■□□□□ 0.08
LIMS1-201ENST00000332345 CSDE1O75534 798 aaKnown RBP15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms