RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 ERBB4Q15303 1308 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 RNMTO43148 476 aaKnown RBP15.19■□□□□ 0.02
COL7A1-201ENST00000328333 DNAJC6O75061 913 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 RAPGEF3O95398 923 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 EME1Q96AY2 570 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 THOC1Q96FV9 657 aaKnown RBP15.19■□□□□ 0.02
COL7A1-201ENST00000328333 LGALS16A8MUM7 142 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 SCRN1Q12765 414 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 LAMB3Q13751 1172 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 ITPRIPL1Q6GPH6 555 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 DDX56Q9NY93 547 aaKnown RBP15.19■□□□□ 0.02
COL7A1-201ENST00000328333 DTNBO60941 627 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 CDH16O75309 829 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 SLC12A1Q13621 1099 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 WDR19Q8NEZ3 1342 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 MAP3K13O43283 966 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 WBP4O75554 376 aaKnown RBP15.19■□□□□ 0.02
COL7A1-201ENST00000328333 SPAG6O75602 509 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 SLC9A1P19634 815 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 PMS2P54278 862 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 STAT4Q14765 748 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 MTHFSDQ2M296 383 aaKnown RBP15.19■□□□□ 0.02
COL7A1-201ENST00000328333 DNAJC9Q8WXX5 260 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 RMDN1Q96DB5 314 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 PRG3Q9Y2Y8 225 aaPredicted RBP15.19■□□□□ 0.02
COL7A1-201ENST00000328333 USP15Q9Y4E8 981 aaPredicted RBP15.19■□□□□ 0.02
COL7A1-201ENST00000328333 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.19■□□□□ 0.02
COL7A1-201ENST00000328333 MMP1P03956 469 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 CUL4AQ13619 759 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 CCNYQ8ND76 341 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 CASP10Q92851 521 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 FAM210AQ96ND0 272 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 CCDC90BQ9GZT6 254 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 OLFML3Q9NRN5 406 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 SAP30BPQ9UHR5 308 aaKnown RBP15.19■□□□□ 0.02
COL7A1-201ENST00000328333 NRBP1Q9UHY1 535 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 SRPRBQ9Y5M8 271 aaKnown RBP15.19■□□□□ 0.02
COL7A1-201ENST00000328333 RP1L1Q8IWN7 2480 aaPredicted RBP15.19■□□□□ 0.02
COL7A1-201ENST00000328333 MOCS3O95396 460 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 RESP18Q5W5W9 173 aa15.19■□□□□ 0.02
COL7A1-201ENST00000328333 KLRF2D3W0D1 207 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 H7C0S8 307 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 OCM2P0CE71 109 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 OCMP0CE72 109 aaPredicted RBP15.18■□□□□ 0.02
COL7A1-201ENST00000328333 CYP2C19P33261 490 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 DDHD1Q8NEL9 900 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 DDX39AO00148 427 aaKnown RBP15.18■□□□□ 0.02
COL7A1-201ENST00000328333 SERPINB3P29508 390 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 PDIA3P30101 505 aaKnown RBP15.18■□□□□ 0.02
COL7A1-201ENST00000328333 IDI1Q13907 227 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 DBNDD2Q9BQY9 259 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 ATP7AQ04656 1500 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 ARHGEF5Q12774 1597 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 LRRN2O75325 713 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 CCNE1P24864 410 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 MARK3P27448 753 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 PCYOX1LQ8NBM8 494 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 CAMSAP1Q5T5Y3 1602 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 CITO14578 2027 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 KRT31Q15323 416 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 ARHGEF1Q92888 912 aaKnown RBP15.18■□□□□ 0.02
COL7A1-201ENST00000328333 TTC17Q96AE7 1141 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 UBE3CQ15386 1083 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 ALKBH5Q6P6C2 394 aaKnown RBP15.18■□□□□ 0.02
COL7A1-201ENST00000328333 SAYSD1Q9NPB0 183 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 GINS2Q9Y248 185 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 MAP1BP46821 2468 aaKnown RBP15.18■□□□□ 0.02
COL7A1-201ENST00000328333 UBN2Q6ZU65 1347 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 TBXAS1P24557 533 aaPredicted RBP15.18■□□□□ 0.02
COL7A1-201ENST00000328333 C11orf57Q6ZUT1 292 aaPredicted RBP15.18■□□□□ 0.02
COL7A1-201ENST00000328333 MAEAQ7L5Y9 396 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 ZNF556Q9HAH1 456 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 RFX7Q2KHR2 1363 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 TNKSO95271 1327 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 SIX6OS1Q8N1H7 587 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 ADNPQ9H2P0 1102 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 NRBP2Q9NSY0 501 aa15.18■□□□□ 0.02
COL7A1-201ENST00000328333 LOC102724159A0A0B4J2E5 919 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 PTK2BQ14289 1009 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 PWP2Q15269 919 aaKnown RBP15.17■□□□□ 0.02
COL7A1-201ENST00000328333 CENPPQ6IPU0 288 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 AMNQ9BXJ7 453 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 PPP1R37O75864 691 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 KLHL2O95198 593 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 DMC1Q14565 340 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 ZNF827Q17R98 1081 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 PLA2G4DQ86XP0 818 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 OTUD7AQ8TE49 926 aaPredicted RBP15.17■□□□□ 0.02
COL7A1-201ENST00000328333 SCFD1Q8WVM8 642 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 KIAA1586Q9HCI6 787 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 SMARCAL1Q9NZC9 954 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 ZRANB2O95218 330 aaKnown RBP eCLIP15.17■□□□□ 0.02
COL7A1-201ENST00000328333 CTDSPL2Q05D32 466 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 TFDP2Q14188 446 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 C4orf50Q6ZRC1 276 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 SPATA21Q7Z572 469 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 MAN1B1Q9UKM7 699 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 LRRIQ4A6NIV6 560 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 PSMA2P25787 234 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 TRIM71Q2Q1W2 868 aaKnown RBP15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms