RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 OSTNP61366 133 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 KIF23Q02241 960 aaPredicted RBP9.3□□□□□ -0.92
USF3-201ENST00000316407 DRP2Q13474 957 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 OR2W6PQ8NHA6 318 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 MCM8Q9UJA3 840 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 NCAPHQ15003 741 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 SIX6OS1Q8N1H7 587 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 METTL22Q9BUU2 404 aaPredicted RBP9.3□□□□□ -0.92
USF3-201ENST00000316407 RERGLQ9H628 205 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 PNMA2Q9UL42 364 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 AP1G2O75843 785 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 TAC1P20366 129 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 OR9Q1Q8NGQ5 310 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 NOD2Q9HC29 1040 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 SESN1Q9Y6P5 492 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 ANP32DO95626 131 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 CDC25CP30307 473 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 PSMC2P35998 433 aaKnown RBP9.3□□□□□ -0.92
USF3-201ENST00000316407 PLIN5Q00G26 463 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 M0R3G1 203 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 ZBED6P86452 979 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 PRPF18Q99633 342 aaKnown RBP9.3□□□□□ -0.92
USF3-201ENST00000316407 NDST4Q9H3R1 872 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 SPOUT1Q5T280 376 aaKnown RBP9.3□□□□□ -0.92
USF3-201ENST00000316407 LRRC8BQ6P9F7 803 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 CCDC81Q6ZN84 652 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 FANCBQ8NB91 859 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 C1orf54Q8WWF1 131 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 DSCC1Q9BVC3 393 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 ZSCAN32Q9NX65 697 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 STMN3Q9NZ72 180 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 LRRIQ3A6PVS8 624 aaPredicted RBP9.3□□□□□ -0.92
USF3-201ENST00000316407 CCND1P24385 295 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 ST13P50502 369 aaKnown RBP9.3□□□□□ -0.92
USF3-201ENST00000316407 RWDD4Q6NW29 188 aaKnown RBP9.3□□□□□ -0.92
USF3-201ENST00000316407 SMNDC1O75940 238 aaKnown RBP eCLIP9.3□□□□□ -0.92
USF3-201ENST00000316407 DDAH1O94760 285 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 MTM1Q13496 603 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 GRIN2BQ13224 1484 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 AARSP49588 968 aaKnown RBP eCLIP9.3□□□□□ -0.92
USF3-201ENST00000316407 COPS2P61201 443 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 Q3C1V9 767 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 ARHGEF25Q86VW2 580 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 PAGE5Q96GU1 130 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 PLCH2O75038 1416 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 IMPDH2P12268 514 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 SMARCA1P28370 1054 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 ZBTB18Q99592 522 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 NUP85Q9BW27 656 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 AKAP4Q5JQC9 854 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 ANKMY2Q8IV38 441 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 C20orf96Q9NUD7 363 aaPredicted RBP9.3□□□□□ -0.92
USF3-201ENST00000316407 ANAPC7Q9UJX3 599 aa9.3□□□□□ -0.92
USF3-201ENST00000316407 TBC1D4O60343 1298 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 MRPS35P82673 323 aaKnown RBP9.29□□□□□ -0.92
USF3-201ENST00000316407 SH3BP5LQ7L8J4 393 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 USP15Q9Y4E8 981 aaPredicted RBP9.29□□□□□ -0.92
USF3-201ENST00000316407 ZFYVE9O95405 1425 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 POLR2BP30876 1174 aaKnown RBP9.29□□□□□ -0.92
USF3-201ENST00000316407 CLK1P49759 484 aaKnown RBP9.29□□□□□ -0.92
USF3-201ENST00000316407 ARL4CP56559 192 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 PWP1Q13610 501 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 ARL2BPQ9Y2Y0 163 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.29□□□□□ -0.92
USF3-201ENST00000316407 TNKSO95271 1327 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.29□□□□□ -0.92
USF3-201ENST00000316407 RSRC2Q7L4I2 434 aaKnown RBP9.29□□□□□ -0.92
USF3-201ENST00000316407 C10orf88Q9H8K7 445 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 DIABLOQ9NR28 239 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 PDIA2Q13087 525 aaKnown RBP9.29□□□□□ -0.92
USF3-201ENST00000316407 TBC1D9BQ66K14 1250 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 NLRX1Q86UT6 975 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 PPM1NQ8N819 430 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 RUBCNLQ9H714 662 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 SARS2Q9NP81 518 aaKnown RBP9.29□□□□□ -0.92
USF3-201ENST00000316407 SEPT9Q9UHD8 586 aaPredicted RBP9.29□□□□□ -0.92
USF3-201ENST00000316407 SEC24CP53992 1094 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 MAPK11Q15759 364 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 IMPG1Q17R60 797 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 NANOGNBQ7Z5D8 188 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 SLFN12Q8IYM2 578 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 TRIM11Q96F44 468 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 GPHNQ9NQX3 736 aaPredicted RBP9.29□□□□□ -0.92
USF3-201ENST00000316407 BATF3Q9NR55 127 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 NXF1Q9UBU9 619 aaKnown RBP9.29□□□□□ -0.92
USF3-201ENST00000316407 FAM95CA0A1B0GW59 222 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 CPA2P48052 419 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 ALKBH5Q6P6C2 394 aaKnown RBP9.29□□□□□ -0.92
USF3-201ENST00000316407 DPP8Q6V1X1 898 aaPredicted RBP9.29□□□□□ -0.92
USF3-201ENST00000316407 ERP27Q96DN0 273 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 NYXQ9GZU5 481 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 TRIM10Q9UDY6 481 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 PODXLO00592 558 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 RHOBTB1O94844 696 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 OTUD4Q01804 1114 aaKnown RBP9.29□□□□□ -0.92
USF3-201ENST00000316407 OLFML1Q6UWY5 402 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 ABHD8Q96I13 439 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 PCP4L1A6NKN8 68 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 DEFA1P59665 94 aa9.29□□□□□ -0.92
USF3-201ENST00000316407 DEFA3P59666 94 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms