RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 C6orf50Q9HD87 102 aa16.73■□□□□ 0.27
CCDC88B-201ENST00000301897 EOMESO95936 686 aa16.72■□□□□ 0.27
CCDC88B-201ENST00000301897 GNA11P29992 359 aa16.72■□□□□ 0.27
CCDC88B-201ENST00000301897 NLRP11P59045 1033 aaKnown RBP16.72■□□□□ 0.27
CCDC88B-201ENST00000301897 RBM10P98175 930 aaKnown RBP16.72■□□□□ 0.27
CCDC88B-201ENST00000301897 SMC1AQ14683 1233 aaKnown RBP16.72■□□□□ 0.27
CCDC88B-201ENST00000301897 TSGA10IPQ3SY00 556 aa16.72■□□□□ 0.27
CCDC88B-201ENST00000301897 SYCE2Q6PIF2 218 aa16.72■□□□□ 0.27
CCDC88B-201ENST00000301897 UBALD2Q8IYN6 164 aa16.72■□□□□ 0.27
CCDC88B-201ENST00000301897 REXO1Q8N1G1 1221 aaKnown RBP16.72■□□□□ 0.27
CCDC88B-201ENST00000301897 BICD2Q8TD16 824 aa16.72■□□□□ 0.27
CCDC88B-201ENST00000301897 MRPL9Q9BYD2 267 aaKnown RBP16.72■□□□□ 0.27
CCDC88B-201ENST00000301897 ZMYND12Q9H0C1 365 aa16.72■□□□□ 0.27
CCDC88B-201ENST00000301897 NRBP2Q9NSY0 501 aa16.72■□□□□ 0.27
CCDC88B-201ENST00000301897 DACT1Q9NYF0 836 aa16.72■□□□□ 0.27
CCDC88B-201ENST00000301897 HCSTQ9UBK5 93 aa16.72■□□□□ 0.27
CCDC88B-201ENST00000301897 BRPF3Q9ULD4 1205 aa16.72■□□□□ 0.27
CCDC88B-201ENST00000301897 SAMM50Q9Y512 469 aa16.72■□□□□ 0.27
CCDC88B-201ENST00000301897 WDR81Q562E7 1941 aa16.72■□□□□ 0.27
CCDC88B-201ENST00000301897 SPTBN4Q9H254 2564 aa16.71■□□□□ 0.27
CCDC88B-201ENST00000301897 KLF18A0A0U1RQI7 1052 aa16.71■□□□□ 0.27
CCDC88B-201ENST00000301897 WDR64B1ANS9 1081 aa16.71■□□□□ 0.27
CCDC88B-201ENST00000301897 AVPR2P30518 371 aa16.71■□□□□ 0.27
CCDC88B-201ENST00000301897 CLCN3P51790 818 aa16.71■□□□□ 0.27
CCDC88B-201ENST00000301897 CDC42EP1Q00587 391 aa16.71■□□□□ 0.27
CCDC88B-201ENST00000301897 APOBRQ0VD83 1088 aa16.71■□□□□ 0.27
CCDC88B-201ENST00000301897 EFCAB12Q6NXP0 572 aa16.71■□□□□ 0.27
CCDC88B-201ENST00000301897 LLGL2Q6P1M3 1020 aa16.71■□□□□ 0.27
CCDC88B-201ENST00000301897 ECHDC2Q86YB7 292 aa16.71■□□□□ 0.27
CCDC88B-201ENST00000301897 ADAMTS10Q9H324 1103 aa16.71■□□□□ 0.27
CCDC88B-201ENST00000301897 GABBR1Q9UBS5 961 aa16.71■□□□□ 0.27
CCDC88B-201ENST00000301897 CFAP54Q96N23 3096 aa16.71■□□□□ 0.27
CCDC88B-201ENST00000301897 MYO10Q9HD67 2058 aa16.71■□□□□ 0.27
CCDC88B-201ENST00000301897 HIDE1A8MVS5 230 aa16.7■□□□□ 0.26
CCDC88B-201ENST00000301897 CIITAP33076 1130 aa16.7■□□□□ 0.26
CCDC88B-201ENST00000301897 MTHFRP42898 656 aa16.7■□□□□ 0.26
CCDC88B-201ENST00000301897 ALDH7A1P49419 539 aaKnown RBP16.7■□□□□ 0.26
CCDC88B-201ENST00000301897 METAP2P50579 478 aaKnown RBP eCLIP16.7■□□□□ 0.26
CCDC88B-201ENST00000301897 FGD1P98174 961 aa16.7■□□□□ 0.26
CCDC88B-201ENST00000301897 MTMR3Q13615 1198 aa16.7■□□□□ 0.26
CCDC88B-201ENST00000301897 PRR16Q569H4 304 aa16.7■□□□□ 0.26
CCDC88B-201ENST00000301897 LRRC55Q6ZSA7 311 aa16.7■□□□□ 0.26
CCDC88B-201ENST00000301897 LINC01465Q8N7H1 131 aa16.7■□□□□ 0.26
CCDC88B-201ENST00000301897 MRPL43Q8N983 215 aaKnown RBP16.7■□□□□ 0.26
CCDC88B-201ENST00000301897 RIPOR3Q96MK2 946 aa16.7■□□□□ 0.26
CCDC88B-201ENST00000301897 SCLT1Q96NL6 688 aa16.7■□□□□ 0.26
CCDC88B-201ENST00000301897 PHOX2BQ99453 314 aa16.7■□□□□ 0.26
CCDC88B-201ENST00000301897 ADAM7Q9H2U9 754 aa16.7■□□□□ 0.26
CCDC88B-201ENST00000301897 FAM217BQ9NTX9 383 aaPredicted RBP16.7■□□□□ 0.26
CCDC88B-201ENST00000301897 RNF19AQ9NV58 838 aa16.7■□□□□ 0.26
CCDC88B-201ENST00000301897 FAM186AA6NE01 2351 aa16.69■□□□□ 0.26
CCDC88B-201ENST00000301897 A0A0U1RQF3 1178 aa16.69■□□□□ 0.26
CCDC88B-201ENST00000301897 OATP04181 439 aa16.69■□□□□ 0.26
CCDC88B-201ENST00000301897 DARSP14868 501 aaKnown RBP16.69■□□□□ 0.26
CCDC88B-201ENST00000301897 CDC27P30260 824 aa16.69■□□□□ 0.26
CCDC88B-201ENST00000301897 SFNP31947 248 aa16.69■□□□□ 0.26
CCDC88B-201ENST00000301897 TRMT1LQ7Z2T5 733 aaKnown RBP16.69■□□□□ 0.26
CCDC88B-201ENST00000301897 RNF169Q8NCN4 708 aa16.69■□□□□ 0.26
CCDC88B-201ENST00000301897 TCEANC2Q96MN5 208 aa16.69■□□□□ 0.26
CCDC88B-201ENST00000301897 TSHZ2Q9NRE2 1034 aa16.69■□□□□ 0.26
CCDC88B-201ENST00000301897 DZANK1Q9NVP4 752 aa16.69■□□□□ 0.26
CCDC88B-201ENST00000301897 NAP1L2Q9ULW6 460 aaPredicted RBP16.69■□□□□ 0.26
CCDC88B-201ENST00000301897 SORCS3Q9UPU3 1222 aa16.69■□□□□ 0.26
CCDC88B-201ENST00000301897 C2orf71A6NGG8 1288 aa16.68■□□□□ 0.26
CCDC88B-201ENST00000301897 JAK3P52333 1124 aa16.68■□□□□ 0.26
CCDC88B-201ENST00000301897 VCPP55072 806 aaKnown RBP16.68■□□□□ 0.26
CCDC88B-201ENST00000301897 AKAP17AQ02040 695 aaKnown RBP16.68■□□□□ 0.26
CCDC88B-201ENST00000301897 TBC1D8BQ0IIM8 1120 aa16.68■□□□□ 0.26
CCDC88B-201ENST00000301897 GIT2Q14161 759 aa16.68■□□□□ 0.26
CCDC88B-201ENST00000301897 BMP2KLQ5H9B9 411 aa16.68■□□□□ 0.26
CCDC88B-201ENST00000301897 SLC39A11Q8N1S5 342 aa16.68■□□□□ 0.26
CCDC88B-201ENST00000301897 TMEM87AQ8NBN3 555 aa16.68■□□□□ 0.26
CCDC88B-201ENST00000301897 KREMEN2Q8NCW0 462 aa16.68■□□□□ 0.26
CCDC88B-201ENST00000301897 CCDC148Q8NFR7 591 aa16.68■□□□□ 0.26
CCDC88B-201ENST00000301897 ATOH1Q92858 354 aaPredicted RBP16.68■□□□□ 0.26
CCDC88B-201ENST00000301897 TMEM169Q96HH4 297 aa16.68■□□□□ 0.26
CCDC88B-201ENST00000301897 RIT2Q99578 217 aa16.68■□□□□ 0.26
CCDC88B-201ENST00000301897 CHST12Q9NRB3 414 aa16.68■□□□□ 0.26
CCDC88B-201ENST00000301897 DISC1Q9NRI5 854 aa16.68■□□□□ 0.26
CCDC88B-201ENST00000301897 HCFC2Q9Y5Z7 792 aa16.68■□□□□ 0.26
CCDC88B-201ENST00000301897 GFRA3O60609 400 aa16.67■□□□□ 0.26
CCDC88B-201ENST00000301897 SKIP12755 728 aa16.67■□□□□ 0.26
CCDC88B-201ENST00000301897 ADD1P35611 737 aaKnown RBP16.67■□□□□ 0.26
CCDC88B-201ENST00000301897 DNM2P50570 870 aa16.67■□□□□ 0.26
CCDC88B-201ENST00000301897 GPC3P51654 580 aa16.67■□□□□ 0.26
CCDC88B-201ENST00000301897 IRX6P78412 446 aaPredicted RBP16.67■□□□□ 0.26
CCDC88B-201ENST00000301897 PRKCEQ02156 737 aa16.67■□□□□ 0.26
CCDC88B-201ENST00000301897 CLLU1OSQ5K130 101 aa16.67■□□□□ 0.26
CCDC88B-201ENST00000301897 ZNF598Q86UK7 904 aaKnown RBP16.67■□□□□ 0.26
CCDC88B-201ENST00000301897 LRRC71Q8N4P6 559 aa16.67■□□□□ 0.26
CCDC88B-201ENST00000301897 RDM1Q8NG50 284 aa16.67■□□□□ 0.26
CCDC88B-201ENST00000301897 NLRP7Q8WX94 980 aa16.67■□□□□ 0.26
CCDC88B-201ENST00000301897 APOL5Q9BWW9 433 aa16.67■□□□□ 0.26
CCDC88B-201ENST00000301897 STK39Q9UEW8 545 aa16.67■□□□□ 0.26
CCDC88B-201ENST00000301897 NID2Q14112 1375 aa16.66■□□□□ 0.26
CCDC88B-201ENST00000301897 PRPF3O43395 683 aaKnown RBP16.66■□□□□ 0.26
CCDC88B-201ENST00000301897 GALR2O43603 387 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-201ENST00000301897 ZNF862O60290 1169 aa16.66■□□□□ 0.26
CCDC88B-201ENST00000301897 GAS7O60861 476 aa16.66■□□□□ 0.26
CCDC88B-201ENST00000301897 CLASP2O75122 1294 aaKnown RBP16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 224.8 ms