RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 TRIM42Q8IWZ5 723 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 HINFPQ9BQA5 517 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 NYXQ9GZU5 481 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 VAT1LQ9HCJ6 419 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 EPS15L1Q9UBC2 864 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 STOML1Q9UBI4 398 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 ARHGAP4P98171 946 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 CAPN12Q6ZSI9 719 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 CREG2Q8IUH2 290 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 UHMK1Q8TAS1 419 aaKnown RBP6.87□□□□□ -1.31
VPS35-201ENST00000299138 ST7Q9NRC1 585 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 NFKBIL1Q9UBC1 381 aaPredicted RBP6.87□□□□□ -1.31
VPS35-201ENST00000299138 SEL1LQ9UBV2 794 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 TMEM191CA6NGB0 347 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 DCTN3O75935 186 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 TMEM191BP0C7N4 346 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 FXR2P51116 673 aaKnown RBP eCLIP6.87□□□□□ -1.317e-7■■■■□ 20.8
VPS35-201ENST00000299138 ZNF827Q17R98 1081 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 MAGEB6Q8N7X4 407 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 ZNF398Q8TD17 642 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 DHX38Q92620 1227 aaKnown RBP6.87□□□□□ -1.31
VPS35-201ENST00000299138 CUL5Q93034 780 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 XPO6Q96QU8 1125 aaKnown RBP6.87□□□□□ -1.31
VPS35-201ENST00000299138 KCND2Q9NZV8 630 aa6.87□□□□□ -1.31
VPS35-201ENST00000299138 ADAMTS7Q9UKP4 1686 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 CCT8L1PA6NM43 557 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 TSC22D2O75157 780 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 STRN3Q13033 797 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 GRAMD1BQ3KR37 738 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 NCAPH2Q6IBW4 605 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 PIK3AP1Q6ZUJ8 805 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 KIFAP3Q92845 792 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 APBB2Q92870 758 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 TATDN2Q93075 761 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 FAM210AQ96ND0 272 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 ASCC2Q9H1I8 757 aaPredicted RBP6.86□□□□□ -1.31
VPS35-201ENST00000299138 TRIM39Q9HCM9 518 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 ARMCX3Q9UH62 379 aaPredicted RBP6.86□□□□□ -1.31
VPS35-201ENST00000299138 XDHP47989 1333 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 PIK3C2AO00443 1686 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 SYCE1LA8MT33 242 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 GSG1L2A8MUP6 293 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 TRAPPC3O43617 180 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 ASPRV1Q53RT3 343 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 STAG2Q8N3U4 1231 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 SRBD1Q8N5C6 995 aaKnown RBP6.86□□□□□ -1.31
VPS35-201ENST00000299138 POMGNT1Q8WZA1 660 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 TTYH3Q9C0H2 523 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 EPB41L5Q9HCM4 733 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 KCNJ14Q9UNX9 436 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 SESN1Q9Y6P5 492 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 PRR23D1E9PI22 279 aaPredicted RBP6.86□□□□□ -1.31
VPS35-201ENST00000299138 DIAPH2O60879 1101 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 PRR23D2P0DMB1 279 aaPredicted RBP6.86□□□□□ -1.31
VPS35-201ENST00000299138 FGFR2P21802 821 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 BMP6P22004 513 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 TROAPQ12815 778 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 KCTD16Q68DU8 428 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 CYB5D1Q6P9G0 228 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 RRAGAQ7L523 313 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 LRP10Q7Z4F1 713 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 HEATR4Q86WZ0 1026 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 NGLY1Q96IV0 654 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 TTC25Q96NG3 672 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 FMO2Q99518 471 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 NDEL1Q9GZM8 345 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 INTS9Q9NV88 658 aaKnown RBP6.86□□□□□ -1.31
VPS35-201ENST00000299138 FGFR1OP2Q9NVK5 253 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 TMOD2Q9NZR1 351 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 GOLGA8IPA6NC78 632 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 UBAP1LF5GYI3 381 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 MCAMP43121 646 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 MSH2P43246 934 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 FNTAP49354 379 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 TOB1P50616 345 aaPredicted RBP6.86□□□□□ -1.31
VPS35-201ENST00000299138 TTLL12Q14166 644 aaPredicted RBP6.86□□□□□ -1.31
VPS35-201ENST00000299138 LRRC24Q50LG9 513 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 SCYL1Q96KG9 808 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 FAM217BQ9NTX9 383 aaPredicted RBP6.86□□□□□ -1.31
VPS35-201ENST00000299138 HACD3Q9P035 362 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 ROBO3Q96MS0 1386 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 PDXKO00764 312 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 RASSF9O75901 435 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 APOA1P02647 267 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 NAPAP54920 295 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 GOLGA8FQ08AF8 430 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 GOLGA8DPQ0D2H9 430 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 AP3B2Q13367 1082 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 LGSNQ5TDP6 509 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 ZNF449Q6P9G9 518 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 TMC4Q7Z404 712 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 TAF6LQ9Y6J9 622 aa6.86□□□□□ -1.31
VPS35-201ENST00000299138 KRIT1O00522 736 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 BCRP11274 1271 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 IFNAR2P48551 515 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 PDCLQ13371 301 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 GPATCH4Q5T3I0 446 aaKnown RBP6.85□□□□□ -1.31
VPS35-201ENST00000299138 CHST3Q7LGC8 479 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 ARL2BPQ9Y2Y0 163 aa6.85□□□□□ -1.31
VPS35-201ENST00000299138 BCL9LQ86UU0 1499 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms