RNA–Protein interactions for RNA: ENST00000267260.4

SRRM4-201, Transcript of serine/arginine repetitive matrix 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SRRM4, Length 8,477 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM4-201ENST00000267260 E5RI56 91 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 CTIFO43310 598 aaKnown RBP12.88□□□□□ -0.35
SRRM4-201ENST00000267260 PSMA2P25787 234 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 ABCE1P61221 599 aaKnown RBP12.88□□□□□ -0.35
SRRM4-201ENST00000267260 ZBED6P86452 979 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 IFT43Q96FT9 208 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 ZNF408Q9H9D4 720 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 GTSE1Q9NYZ3 720 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 CACNA1FO60840 1977 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 FAM173BQ6P4H8 233 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 FAM180AQ6UWF9 173 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 BRD8Q9H0E9 1235 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 MBD2Q9UBB5 411 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 ADAM21Q9UKJ8 722 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 LRFN2Q9ULH4 789 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 DAB2IPQ5VWQ8 1189 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 TGS1Q96RS0 853 aaKnown RBP12.88□□□□□ -0.35
SRRM4-201ENST00000267260 NUP62P37198 522 aaPredicted RBP12.88□□□□□ -0.35
SRRM4-201ENST00000267260 CNGA2Q16280 664 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 IFNL3Q8IZI9 196 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 ULK4Q96C45 1275 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 USP40Q9NVE5 1235 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 FAM170AA1A519 330 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 DIAPH2O60879 1101 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 TTLL1O95922 423 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 ALAS1P13196 640 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 CCNA1P78396 465 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 KRT27Q7Z3Y8 459 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 ZNF556Q9HAH1 456 aa12.88□□□□□ -0.35
SRRM4-201ENST00000267260 AP3B1O00203 1094 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 CCDC87Q9NVE4 849 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 ARIH2O95376 493 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 GADL1Q6ZQY3 521 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 USP28Q96RU2 1077 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 TRIM62Q9BVG3 475 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 TSSK1BQ9BXA7 367 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 RPF1Q9H9Y2 349 aaKnown RBP12.87□□□□□ -0.35
SRRM4-201ENST00000267260 hCG_1642624A0A1W2PR95 340 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 GGPS1O95749 300 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 HIC1Q14526 733 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 SLC9A5Q14940 896 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 FAM133AQ8N9E0 248 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 DTX3LQ8TDB6 740 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 AMNQ9BXJ7 453 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 GRIN2AQ12879 1464 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 PLB1Q6P1J6 1458 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 MIF4GDA9UHW6 222 aaKnown RBP12.87□□□□□ -0.35
SRRM4-201ENST00000267260 KIF23Q02241 960 aaPredicted RBP12.87□□□□□ -0.35
SRRM4-201ENST00000267260 LRRC8EQ6NSJ5 796 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 BTN2A2Q8WVV5 523 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 NT5C2P49902 561 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 TFAMQ00059 246 aaKnown RBP12.87□□□□□ -0.35
SRRM4-201ENST00000267260 FAM47AQ5JRC9 791 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 FTOQ9C0B1 505 aaKnown RBP eCLIP12.87□□□□□ -0.35
SRRM4-201ENST00000267260 AP5M1Q9H0R1 490 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 CXorf56Q9H5V9 222 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 GEMIN8Q9NWZ8 242 aaKnown RBP12.87□□□□□ -0.35
SRRM4-201ENST00000267260 COL17A1Q9UMD9 1497 aaPredicted RBP12.87□□□□□ -0.35
SRRM4-201ENST00000267260 SEMA3EO15041 775 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 CALB1P05937 261 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 KITP10721 976 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 NFU1Q9UMS0 254 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 VCPP55072 806 aaKnown RBP12.87□□□□□ -0.35
SRRM4-201ENST00000267260 SLC7A5Q01650 507 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 ACTN3Q08043 901 aaPredicted RBP12.87□□□□□ -0.35
SRRM4-201ENST00000267260 NAALADL2Q58DX5 795 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 CASP10Q92851 521 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 RUBCNLQ9H714 662 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 ETNK1Q9HBU6 452 aa12.87□□□□□ -0.35
SRRM4-201ENST00000267260 RECQLP46063 649 aaPredicted RBP12.86□□□□□ -0.35
SRRM4-201ENST00000267260 PPP2R2AP63151 447 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 CYTH1Q15438 398 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 TRIM16LQ309B1 348 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 OTUD7BQ6GQQ9 843 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 TRIM63Q969Q1 353 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 AGBL1Q96MI9 1066 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 PCDHA1Q9Y5I3 950 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 GFPT2O94808 682 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 ZAP70P43403 619 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 STX3Q13277 289 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 HSPH1Q92598 858 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 OSBPL9Q96SU4 736 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 ARIH1Q9Y4X5 557 aaPredicted RBP12.86□□□□□ -0.35
SRRM4-201ENST00000267260 KCNA3P22001 575 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 SPATA17Q96L03 361 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 ABCB6Q9NP58 842 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 OLFML3Q9NRN5 406 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 CCNL1Q9UK58 526 aaPredicted RBP12.86□□□□□ -0.35
SRRM4-201ENST00000267260 PCDHGB4Q9UN71 923 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 M0R3G1 203 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 FMNL1O95466 1100 aaPredicted RBP12.86□□□□□ -0.35
SRRM4-201ENST00000267260 TP53BP2Q13625 1128 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 PROM2Q8N271 834 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 PRPF18Q99633 342 aaKnown RBP12.86□□□□□ -0.35
SRRM4-201ENST00000267260 GINM1Q9NU53 330 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 NUMA1Q14980 2115 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 GRID2IPA4D2P6 1211 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 LDHAP00338 332 aaKnown RBP12.86□□□□□ -0.35
SRRM4-201ENST00000267260 THEM5Q8N1Q8 247 aa12.86□□□□□ -0.35
SRRM4-201ENST00000267260 SENP1Q9P0U3 644 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms