RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 DPYSL4O14531 572 aa20.47■□□□□ 0.87
UPF1-201ENST00000262803 SRGAP2O75044 1071 aa20.47■□□□□ 0.87
UPF1-201ENST00000262803 TRIP13Q15645 432 aaPredicted RBP20.47■□□□□ 0.87
UPF1-201ENST00000262803 Q3C1V9 767 aa20.47■□□□□ 0.87
UPF1-201ENST00000262803 TRIM72Q6ZMU5 477 aa20.47■□□□□ 0.87
UPF1-201ENST00000262803 KLHL29Q96CT2 875 aa20.47■□□□□ 0.87
UPF1-201ENST00000262803 CEP72Q9P209 647 aa20.47■□□□□ 0.87
UPF1-201ENST00000262803 CLTCL1P53675 1640 aa20.47■□□□□ 0.87
UPF1-201ENST00000262803 EIF3DO15371 548 aaKnown RBP eCLIP20.47■□□□□ 0.87
UPF1-201ENST00000262803 CLDN3O15551 220 aa20.47■□□□□ 0.87
UPF1-201ENST00000262803 MED14O60244 1454 aa20.47■□□□□ 0.87
UPF1-201ENST00000262803 UTYO14607 1347 aa20.47■□□□□ 0.87
UPF1-201ENST00000262803 FGGP02679 453 aa20.47■□□□□ 0.87
UPF1-201ENST00000262803 PYGBP11216 843 aa20.47■□□□□ 0.87
UPF1-201ENST00000262803 DEUP1Q05D60 604 aa20.47■□□□□ 0.87
UPF1-201ENST00000262803 XXYLT1Q8NBI6 393 aa20.47■□□□□ 0.87
UPF1-201ENST00000262803 IRAK4Q9NWZ3 460 aa20.47■□□□□ 0.87
UPF1-201ENST00000262803 SFI1A8K8P3 1242 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 TERF2Q15554 542 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 TSGA10IPQ3SY00 556 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 MTRQ99707 1265 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 ZMYND12Q9H0C1 365 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 USP17L10C9JJH3 530 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 NMT2O60551 498 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 TAF11Q15544 211 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 CC2D1AQ6P1N0 951 aaPredicted RBP20.46■□□□□ 0.87
UPF1-201ENST00000262803 SCYL3Q8IZE3 742 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 FBXL13Q8NEE6 735 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 NLRP4Q96MN2 994 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 HERC5Q9UII4 1024 aaKnown RBP20.46■□□□□ 0.87
UPF1-201ENST00000262803 PNPLA6Q8IY17 1366 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 USP27XA6NNY8 438 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 PALMO75781 387 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 GCKP35557 465 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 MINPP1Q9UNW1 487 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 ANO9A1A5B4 782 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 GOLGA8IPA6NC78 632 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 GOLGA8JA6NMD2 632 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 SNAP25P60880 206 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 ESRRGP62508 458 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 TKFCQ3LXA3 575 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 RMDN3Q96TC7 470 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 DCP1AQ9NPI6 582 aaPredicted RBP20.46■□□□□ 0.87
UPF1-201ENST00000262803 COL15A1P39059 1388 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 GH2P01242 217 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 GPC3P51654 580 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 GYS2P54840 703 aa20.46■□□□□ 0.87
UPF1-201ENST00000262803 DHX40Q8IX18 779 aaKnown RBP20.46■□□□□ 0.87
UPF1-201ENST00000262803 LAMC1P11047 1609 aa20.45■□□□□ 0.86
UPF1-201ENST00000262803 GOLGA8MH3BSY2 632 aa20.45■□□□□ 0.86
UPF1-201ENST00000262803 ARL4CP56559 192 aa20.45■□□□□ 0.86
UPF1-201ENST00000262803 TAP1Q03518 808 aa20.45■□□□□ 0.86
UPF1-201ENST00000262803 RCN2Q14257 317 aa20.45■□□□□ 0.86
UPF1-201ENST00000262803 GANCQ8TET4 914 aa20.45■□□□□ 0.86
UPF1-201ENST00000262803 SPDL1Q96EA4 605 aa20.45■□□□□ 0.86
UPF1-201ENST00000262803 UPF3AQ9H1J1 476 aaKnown RBP20.45■□□□□ 0.86
UPF1-201ENST00000262803 EXOC1LA0A1B0GW35 172 aa20.45■□□□□ 0.86
UPF1-201ENST00000262803 LRRC53A6NM62 1247 aa20.45■□□□□ 0.86
UPF1-201ENST00000262803 CASP2P42575 452 aa20.45■□□□□ 0.86
UPF1-201ENST00000262803 TADA2BQ86TJ2 420 aa20.45■□□□□ 0.86
UPF1-201ENST00000262803 TEX12Q9BXU0 123 aa20.45■□□□□ 0.86
UPF1-201ENST00000262803 ZNF302Q9NR11 478 aa20.45■□□□□ 0.86
UPF1-201ENST00000262803 ADAM21Q9UKJ8 722 aa20.45■□□□□ 0.86
UPF1-201ENST00000262803 KPNA7A9QM74 516 aa20.45■□□□□ 0.86
UPF1-201ENST00000262803 ITPRIPL1Q6GPH6 555 aa20.45■□□□□ 0.86
UPF1-201ENST00000262803 SHC4Q6S5L8 630 aa20.45■□□□□ 0.86
UPF1-201ENST00000262803 ZNF560Q96MR9 790 aa20.45■□□□□ 0.86
UPF1-201ENST00000262803 MTIF3Q9H2K0 278 aaKnown RBP20.45■□□□□ 0.86
UPF1-201ENST00000262803 SUN2Q9UH99 717 aa20.45■□□□□ 0.86
UPF1-201ENST00000262803 LRRC7Q96NW7 1537 aa20.45■□□□□ 0.86
UPF1-201ENST00000262803 MROH7-TTC4A0A0A0MT08 1334 aa20.45■□□□□ 0.86
UPF1-201ENST00000262803 DENND3A2RUS2 1198 aa20.45■□□□□ 0.86
UPF1-201ENST00000262803 SMIM24O75264 130 aa20.45■□□□□ 0.86
UPF1-201ENST00000262803 P4HBP07237 508 aaKnown RBP20.45■□□□□ 0.86
UPF1-201ENST00000262803 TEX33O43247 280 aa20.44■□□□□ 0.86
UPF1-201ENST00000262803 PIGOQ8TEQ8 1089 aa20.44■□□□□ 0.86
UPF1-201ENST00000262803 DNAJC12Q9UKB3 198 aa20.44■□□□□ 0.86
UPF1-201ENST00000262803 ADGRG1Q9Y653 693 aa20.44■□□□□ 0.86
UPF1-201ENST00000262803 CD58P19256 250 aa20.44■□□□□ 0.86
UPF1-201ENST00000262803 E2F5Q15329 346 aa20.44■□□□□ 0.86
UPF1-201ENST00000262803 PYROXD1Q8WU10 500 aa20.44■□□□□ 0.86
UPF1-201ENST00000262803 SUCLA2Q9P2R7 463 aaPredicted RBP20.44■□□□□ 0.86
UPF1-201ENST00000262803 ZCCHC11Q5TAX3 1644 aaKnown RBP20.44■□□□□ 0.86
UPF1-201ENST00000262803 CLGNO14967 610 aa20.44■□□□□ 0.86
UPF1-201ENST00000262803 ECE2O60344 883 aa20.44■□□□□ 0.86
UPF1-201ENST00000262803 KRT38O76015 456 aa20.44■□□□□ 0.86
UPF1-201ENST00000262803 PEX3P56589 373 aa20.44■□□□□ 0.86
UPF1-201ENST00000262803 GRM4Q14833 912 aa20.44■□□□□ 0.86
UPF1-201ENST00000262803 ZNF699Q32M78 642 aa20.44■□□□□ 0.86
UPF1-201ENST00000262803 TRIM67Q6ZTA4 783 aa20.44■□□□□ 0.86
UPF1-201ENST00000262803 ACAD9Q9H845 621 aa20.44■□□□□ 0.86
UPF1-201ENST00000262803 GSG1L2A8MUP6 293 aa20.44■□□□□ 0.86
UPF1-201ENST00000262803 KIF28PB7ZC32 967 aa20.44■□□□□ 0.86
UPF1-201ENST00000262803 RAD51Q06609 339 aa20.44■□□□□ 0.86
UPF1-201ENST00000262803 NAA30Q147X3 362 aaPredicted RBP20.44■□□□□ 0.86
UPF1-201ENST00000262803 LARP7Q4G0J3 582 aaKnown RBP eCLIP20.44■□□□□ 0.86
UPF1-201ENST00000262803 FAM133BQ5BKY9 247 aaKnown RBP20.44■□□□□ 0.86
UPF1-201ENST00000262803 SLC10A5Q5PT55 438 aa20.44■□□□□ 0.86
UPF1-201ENST00000262803 SGMS1Q86VZ5 419 aa20.44■□□□□ 0.86
UPF1-201ENST00000262803 PPP2R3CQ969Q6 453 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms