RNA–Protein interactions for RNA: ENST00000217315.9

TM9SF4-201, Transcript of transmembrane 9 superfamily member 4, humanhuman

TSL 2 BASIC

Gene TM9SF4, Length 4,032 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-201ENST00000217315 KRT14P02533 472 aa13.36□□□□□ -0.27
TM9SF4-201ENST00000217315 MAPK4P31152 587 aa13.36□□□□□ -0.27
TM9SF4-201ENST00000217315 SREBF1P36956 1147 aa13.36□□□□□ -0.27
TM9SF4-201ENST00000217315 SLCO1A2P46721 670 aa13.36□□□□□ -0.27
TM9SF4-201ENST00000217315 SHROOM1Q2M3G4 852 aaPredicted RBP13.36□□□□□ -0.27
TM9SF4-201ENST00000217315 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.36□□□□□ -0.274e-7■■■□□ 16.9
TM9SF4-201ENST00000217315 IKBKGQ9Y6K9 419 aa13.36□□□□□ -0.27
TM9SF4-201ENST00000217315 MYO1CO00159 1063 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 ADCY8P40145 1251 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 PIK3CAP42336 1068 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 CRY2Q49AN0 593 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 EEPD1Q7L9B9 569 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 VIPAS39Q9H9C1 493 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 PARP2Q9UGN5 583 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 NAGPAQ9UK23 515 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 RAB21Q9UL25 225 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 DENND3A2RUS2 1198 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 HDLBPQ00341 1268 aaKnown RBP13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 CUL1Q13616 776 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 SLC35G1Q2M3R5 365 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 SEPT14Q6ZU15 432 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 RHOT2Q8IXI1 618 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 RPUSD2Q8IZ73 545 aaKnown RBP13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 ANKRD42Q8N9B4 389 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 SIK3Q9Y2K2 1263 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 BCL9LQ86UU0 1499 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 WDR64B1ANS9 1081 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 DAPK3O43293 454 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 ATF7P17544 494 aaPredicted RBP13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 PON1P27169 355 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 IFNAR2P48551 515 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 EN1Q05925 392 aaPredicted RBP13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 RASA3Q14644 834 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 MMGT1Q8N4V1 131 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 HDAC7Q8WUI4 952 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 FAM151AQ8WW52 585 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 SLC7A3Q8WY07 619 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 RFFLQ8WZ73 363 aa13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 TAF1DQ9H5J8 278 aaPredicted RBP13.35□□□□□ -0.27
TM9SF4-201ENST00000217315 KAZNQ674X7 775 aa13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 CEP57Q86XR8 500 aa13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 NKIRAS1Q9NYS0 192 aa13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 FEZ2Q9UHY8 353 aaPredicted RBP13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 CAPN7Q9Y6W3 813 aa13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 GRID2IPA4D2P6 1211 aa13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 PDE2AO00408 941 aaPredicted RBP13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 IRX3P78415 501 aaPredicted RBP13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 ALCAMQ13740 583 aa13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 LRRC55Q6ZSA7 311 aa13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 DDX42Q86XP3 938 aaKnown RBP eCLIP13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 SYN2Q92777 582 aaPredicted RBP13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 RNF146Q9NTX7 359 aa13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 TBC1D22BQ9NU19 505 aa13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 SLC16A3O15427 465 aaKnown RBP13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 BUB1BO60566 1050 aaPredicted RBP13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 ARP10275 920 aa13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 IFT88Q13099 833 aa13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 ECM1Q16610 540 aa13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 CAPN12Q6ZSI9 719 aa13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 VTI1AQ96AJ9 217 aa13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 DNAJC19Q96DA6 116 aa13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 STK33Q9BYT3 514 aa13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 PLCB1Q9NQ66 1216 aa13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 ATF5Q9Y2D1 282 aaPredicted RBP13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 PCDHB4Q9Y5E5 795 aa13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 PASKQ96RG2 1323 aa13.34□□□□□ -0.27
TM9SF4-201ENST00000217315 BAZ2AQ9UIF9 1905 aaKnown RBP13.33□□□□□ -0.27
TM9SF4-201ENST00000217315 TMOD1P28289 359 aa13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 CASP5P51878 434 aa13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 BFSP1Q12934 665 aa13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 TRIP13Q15645 432 aaPredicted RBP13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 SGO2Q562F6 1265 aa13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 MOXD1Q6UVY6 613 aa13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 SLC35G2Q8TBE7 412 aa13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 NEK9Q8TD19 979 aa13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 POLR3CQ9BUI4 534 aaPredicted RBP13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 DNAJC17Q9NVM6 304 aaKnown RBP13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 APEX2Q9UBZ4 518 aa13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 CHORDC1Q9UHD1 332 aaPredicted RBP13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 ZBTB39O15060 712 aa13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 RAD51CO43502 376 aa13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 GPC5P78333 572 aa13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 RSBN1LQ6PCB5 846 aaPredicted RBP13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 TAOK1Q7L7X3 1001 aa13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 NCAPG2Q86XI2 1143 aa13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 METTL13Q8N6R0 699 aa13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 GMCL1Q96IK5 515 aa13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 GABBR1Q9UBS5 961 aa13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 PPP1R11O60927 126 aaPredicted RBP13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 CCND2P30279 289 aa13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 KCNA1Q09470 495 aa13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 FAM213AQ9BRX8 229 aa13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 KCNH7Q9NS40 1196 aa13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 KCNG1Q9UIX4 513 aa13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 PNMA2Q9UL42 364 aa13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 ODF2LQ9ULJ1 636 aa13.33□□□□□ -0.28
TM9SF4-201ENST00000217315 YWHABP31946 246 aaKnown RBP13.32□□□□□ -0.28
TM9SF4-201ENST00000217315 NPEPPSP55786 919 aa13.32□□□□□ -0.28
TM9SF4-201ENST00000217315 SNRNP48Q6IEG0 339 aaKnown RBP13.32□□□□□ -0.28
TM9SF4-201ENST00000217315 ZNF571Q7Z3V5 609 aaPredicted RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms