RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 PNMA8CA0A1B0GUJ8 204 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 ZNF197O14709 1029 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 TADA3O75528 432 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 TMED1Q13445 227 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 TINF2Q9BSI4 451 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 DISC1Q9NRI5 854 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 LMBRD1Q9NUN5 540 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 SPDYE16A6NNV3 312 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-201ENST00000011700 ZBTB7BO15156 539 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-201ENST00000011700 KLHL2O95198 593 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 COPB1P53618 953 aaKnown RBP6.47□□□□□ -1.37
VPS13D-201ENST00000011700 KRT24Q2M2I5 525 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 SPDYE2Q495Y8 402 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 PLEKHM3Q6ZWE6 761 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 U2AF1L4Q8WU68 220 aaKnown RBP6.47□□□□□ -1.37
VPS13D-201ENST00000011700 XAGE2Q96GT9 111 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.47□□□□□ -1.37
VPS13D-201ENST00000011700 LSG1Q9H089 658 aaKnown RBP6.47□□□□□ -1.37
VPS13D-201ENST00000011700 VPS33BQ9H267 617 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 SUGT1Q9Y2Z0 365 aa6.47□□□□□ -1.37
VPS13D-201ENST00000011700 CFAP69A5D8W1 941 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 OPLAHO14841 1288 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 FOXO3O43524 673 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 JAK1P23458 1154 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 TRPC1P48995 793 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 RAD51Q06609 339 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 ARHGAP44Q17R89 818 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 FAM47CQ5HY64 1035 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 ANKS3Q6ZW76 656 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 KCNK16Q96T55 309 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 TRIM31Q9BZY9 425 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 CEP72Q9P209 647 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 PCDHA4Q9UN74 947 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 NUP214P35658 2090 aaPredicted RBP6.46□□□□□ -1.37
VPS13D-201ENST00000011700 A0A1W2PQC6 194 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 CHL1O00533 1208 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 COPEO14579 308 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 PPARAQ07869 468 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 SUPT20HL1Q3ZLR7 823 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 TRMT10CQ7L0Y3 403 aaKnown RBP6.46□□□□□ -1.37
VPS13D-201ENST00000011700 LUZP2Q86TE4 346 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 PPM1KQ8N3J5 372 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 CNKSR1Q969H4 720 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 LRRC4Q9HBW1 653 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 PSD3Q9NYI0 1048 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 EMILIN1Q9Y6C2 1016 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 SF3B1O75533 1304 aaKnown RBP eCLIP6.46□□□□□ -1.372e-6■■■■■ 119.1
VPS13D-201ENST00000011700 FLT1P17948 1338 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 PCM1Q15154 2024 aa6.46□□□□□ -1.37
VPS13D-201ENST00000011700 SERPINB1P30740 379 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 BYSLQ13895 437 aaKnown RBP6.46□□□□□ -1.38
VPS13D-201ENST00000011700 STAT4Q14765 748 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 MTFR1Q15390 333 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 SIX6OS1Q8N1H7 587 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 THEM5Q8N1Q8 247 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 P2RX5Q93086 422 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 PGBD1Q96JS3 809 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 MED10Q9BTT4 135 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 TMX1Q9H3N1 280 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 KRT82Q9NSB4 513 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 STARD13Q9Y3M8 1113 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 ESPL1Q14674 2120 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 DAB1O75553 588 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 BMP10O95393 424 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 ZBED1O96006 694 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 CCND1P24385 295 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 CCND2P30279 289 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 CTSWP56202 376 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 MEI1Q5TIA1 1274 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 DPP8Q6V1X1 898 aaPredicted RBP6.46□□□□□ -1.38
VPS13D-201ENST00000011700 FAM160B2Q86V87 743 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 MRPL1Q9BYD6 325 aaKnown RBP6.46□□□□□ -1.38
VPS13D-201ENST00000011700 MAPRE3Q9UPY8 281 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 PFKFB1P16118 471 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 SLC9A1P19634 815 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 TPH2Q8IWU9 490 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 MAGED4Q96JG8 741 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 C2orf40Q9H1Z8 148 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 WDR35Q9P2L0 1181 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 CAPN11Q9UMQ6 739 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 PPME1Q9Y570 386 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 H7C0C1 242 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 NDUFA10O95299 355 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 ATP5OP48047 213 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 MRPS15P82914 257 aaKnown RBP6.46□□□□□ -1.38
VPS13D-201ENST00000011700 EPS8Q12929 822 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 NUGGCQ68CJ6 796 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 ZBTB38Q8NAP3 1195 aaPredicted RBP6.46□□□□□ -1.38
VPS13D-201ENST00000011700 BTBD6Q96KE9 485 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 SLC52A2Q9HAB3 445 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 SPTLC3Q9NUV7 552 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 TRPC5Q9UL62 973 aaPredicted RBP6.46□□□□□ -1.38
VPS13D-201ENST00000011700 FAM32AQ9Y421 112 aaKnown RBP6.46□□□□□ -1.38
VPS13D-201ENST00000011700 SNX14Q9Y5W7 946 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 CPSF1Q10570 1443 aaKnown RBP6.46□□□□□ -1.38
VPS13D-201ENST00000011700 MROH2AA6NES4 1674 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 COG2Q14746 738 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 EFTUD2Q15029 972 aaKnown RBP eCLIP6.46□□□□□ -1.383e-7■■■□□ 14.9
VPS13D-201ENST00000011700 TSC22D1Q15714 1073 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 TAB1Q15750 504 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms