RNA–Protein interactions for RNA: YLL039C

UBI4, Transcript of Ubiquitin, yeast

Gene UBI4, Length 1,146 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBI4	YLL039C	VCX1	Q99385	411 aa		4.24	□□□□□ -1.73
UBI4	YLL039C	PRP8	P33334	2413 aa	Known RBP	4.23	□□□□□ -1.73
UBI4	YLL039C	YPR096C	O13587	100 aa		4.23	□□□□□ -1.73
UBI4	YLL039C	RAS2	P01120	322 aa	Known RBP	4.23	□□□□□ -1.73
UBI4	YLL039C	RPS17A	P02407	136 aa	Known RBP	4.23	□□□□□ -1.73
UBI4	YLL039C	CBP2	P03874	630 aa	Predicted RBP	4.23	□□□□□ -1.73
UBI4	YLL039C	PDE2	P06776	526 aa		4.23	□□□□□ -1.73
UBI4	YLL039C	STE7	P06784	515 aa		4.23	□□□□□ -1.73
UBI4	YLL039C	COR1	P07256	457 aa		4.23	□□□□□ -1.73
UBI4	YLL039C	RPS17B	P14127	136 aa	Known RBP	4.23	□□□□□ -1.73
UBI4	YLL039C	PHO81	P17442	1178 aa		4.23	□□□□□ -1.73
UBI4	YLL039C	TAH1	P25638	111 aa	Predicted RBP	4.23	□□□□□ -1.73
UBI4	YLL039C	IDH2	P28241	369 aa	Known RBP	4.23	□□□□□ -1.73
UBI4	YLL039C	DGR2	P32330	852 aa		4.23	□□□□□ -1.73
UBI4	YLL039C	YMC1	P32331	307 aa		4.23	□□□□□ -1.73
UBI4	YLL039C	SSH4	P32343	579 aa		4.23	□□□□□ -1.73
UBI4	YLL039C	DUT1	P33317	147 aa		4.23	□□□□□ -1.73
UBI4	YLL039C	GDH2	P33327	1092 aa	Known RBP	4.23	□□□□□ -1.73
UBI4	YLL039C	NIC96	P34077	839 aa		4.23	□□□□□ -1.73
UBI4	YLL039C	ANR2	P36090	516 aa	Predicted RBP	4.23	□□□□□ -1.73
UBI4	YLL039C	YBR241C	P38142	488 aa		4.23	□□□□□ -1.73
UBI4	YLL039C	BNA4	P38169	460 aa		4.23	□□□□□ -1.73
UBI4	YLL039C	YBR285W	P38354	144 aa		4.23	□□□□□ -1.73
UBI4	YLL039C	RPL10	P41805	221 aa	Known RBP	4.23	□□□□□ -1.73
UBI4	YLL039C	PSA1	P41940	361 aa	Known RBP	4.23	□□□□□ -1.73
UBI4	YLL039C	BNA3	P47039	444 aa	Known RBP	4.23	□□□□□ -1.73
UBI4	YLL039C	TRM9	P49957	279 aa		4.23	□□□□□ -1.73
UBI4	YLL039C	YGR012W	P53206	393 aa		4.23	□□□□□ -1.73
UBI4	YLL039C	ARC35	P53731	342 aa	Known RBP	4.23	□□□□□ -1.73
UBI4	YLL039C	YPL071C	Q02864	156 aa		4.23	□□□□□ -1.73
UBI4	YLL039C	YDR476C	Q03362	224 aa		4.23	□□□□□ -1.73
UBI4	YLL039C	RVB1	Q03940	463 aa	Known RBP	4.23	□□□□□ -1.73
UBI4	YLL039C	YHC1	Q05900	231 aa	Known RBP	4.23	□□□□□ -1.73
UBI4	YLL039C	VPS74	Q06385	345 aa		4.23	□□□□□ -1.73
UBI4	YLL039C	YOL159C	Q08300	171 aa		4.23	□□□□□ -1.73
UBI4	YLL039C	DIA2	Q08496	732 aa	Predicted RBP	4.23	□□□□□ -1.73
UBI4	YLL039C	YPR202W	Q08993	238 aa		4.23	□□□□□ -1.73
UBI4	YLL039C	MED2	Q12124	431 aa		4.23	□□□□□ -1.73
UBI4	YLL039C	SNU23	Q12368	194 aa	Predicted RBP	4.23	□□□□□ -1.73
UBI4	YLL039C	MED11	Q99278	115 aa		4.23	□□□□□ -1.73
UBI4	YLL039C	RAP1	P11938	827 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	VPS33	P20795	691 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	KGD1	P20967	1014 aa	Known RBP	4.22	□□□□□ -1.73
UBI4	YLL039C	CCA1	P21269	546 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	ARE1	P25628	610 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	CSM1	P25651	190 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	CDC12	P32468	407 aa	Known RBP	4.22	□□□□□ -1.73
UBI4	YLL039C	CAT2	P32796	670 aa	Known RBP	4.22	□□□□□ -1.73
UBI4	YLL039C	UGP1	P32861	499 aa	Known RBP	4.22	□□□□□ -1.73
UBI4	YLL039C	PDR3	P33200	976 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	MRPL17	P36528	281 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	MCM7	P38132	845 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	LSM12	P38828	187 aa	Known RBP	4.22	□□□□□ -1.73
UBI4	YLL039C	PRP39	P39682	629 aa	Known RBP	4.22	□□□□□ -1.73
UBI4	YLL039C	JLP2	P40206	208 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	VHR1	P40522	640 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	IMA5	P40884	581 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	GAB1	P41733	394 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	ELP2	P42935	788 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	LSM1	P47017	172 aa	Known RBP	4.22	□□□□□ -1.73
UBI4	YLL039C	ASK10	P48361	1146 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	UPF3	P48412	387 aa	Known RBP	4.22	□□□□□ -1.73
UBI4	YLL039C	EXG2	P52911	562 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	COG2	P53271	262 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	SVL3	Q03088	825 aa	Known RBP	4.22	□□□□□ -1.73
UBI4	YLL039C	MSC1	Q03104	513 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	TRS23	Q03784	219 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	APC4	Q04601	652 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	RSF1	Q05043	376 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	NNT1	Q05874	261 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	TEN1	Q07921	160 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	YOL131W	Q08270	108 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	NSL1	Q12143	216 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	FRE7	Q12333	620 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	TRA1	P38811	3744 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	NUM1	Q00402	2748 aa		4.22	□□□□□ -1.73
UBI4	YLL039C	ATP4	P05626	244 aa		4.21	□□□□□ -1.74
UBI4	YLL039C	TPK3	P05986	398 aa		4.21	□□□□□ -1.74
UBI4	YLL039C	TPK2	P06245	380 aa		4.21	□□□□□ -1.74
UBI4	YLL039C	ALG7	P07286	448 aa		4.21	□□□□□ -1.74
UBI4	YLL039C	TOP3	P13099	656 aa		4.21	□□□□□ -1.74
UBI4	YLL039C	CBS2	P14905	389 aa		4.21	□□□□□ -1.74
UBI4	YLL039C	DAP2	P18962	818 aa		4.21	□□□□□ -1.74
UBI4	YLL039C	RVS161	P25343	265 aa	Known RBP	4.21	□□□□□ -1.74
UBI4	YLL039C	PTC6	P25646	442 aa		4.21	□□□□□ -1.74
UBI4	YLL039C	APE2	P32454	952 aa	Known RBP	4.21	□□□□□ -1.74
UBI4	YLL039C	SEC17	P32602	292 aa		4.21	□□□□□ -1.74
UBI4	YLL039C	RPS27A	P35997	82 aa	Known RBP	4.21	□□□□□ -1.74
UBI4	YLL039C	DOA1	P36037	715 aa		4.21	□□□□□ -1.74
UBI4	YLL039C	ROT2	P38138	954 aa		4.21	□□□□□ -1.74
UBI4	YLL039C	RPS27B	P38711	82 aa		4.21	□□□□□ -1.74
UBI4	YLL039C	YHR210C	P38893	341 aa		4.21	□□□□□ -1.74
UBI4	YLL039C	THO1	P40040	218 aa	Known RBP	4.21	□□□□□ -1.74
UBI4	YLL039C	AVT6	P40074	448 aa		4.21	□□□□□ -1.74
UBI4	YLL039C	DDI1	P40087	428 aa		4.21	□□□□□ -1.74
UBI4	YLL039C	HXT9	P40885	567 aa		4.21	□□□□□ -1.74
UBI4	YLL039C	CHA4	P43634	648 aa		4.21	□□□□□ -1.74
UBI4	YLL039C	ATP22	P50273	684 aa	Predicted RBP	4.21	□□□□□ -1.74
UBI4	YLL039C	DIA3	P52290	468 aa		4.21	□□□□□ -1.74
UBI4	YLL039C	ERG13	P54839	491 aa	Known RBP	4.21	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 104.6 ms