RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W RPS18AP0CX55 146 aaKnown RBP1.08□□□□□ -2.24
CDC39YCR093W RPS18BP0CX56 146 aaPredicted RBP1.08□□□□□ -2.24
CDC39YCR093W HXT2P23585 541 aa1.08□□□□□ -2.24
CDC39YCR093W CPR4P25334 318 aa1.08□□□□□ -2.24
CDC39YCR093W RFT1P38206 574 aaPredicted RBP1.08□□□□□ -2.24
CDC39YCR093W TOM22P49334 152 aa1.08□□□□□ -2.24
CDC39YCR093W AZR1P50080 613 aa1.08□□□□□ -2.24
CDC39YCR093W MRPL50P53724 139 aa1.08□□□□□ -2.24
CDC39YCR093W SVL3Q03088 825 aaKnown RBP1.08□□□□□ -2.24
CDC39YCR093W ADE13Q05911 482 aaKnown RBP1.08□□□□□ -2.24
CDC39YCR093W SOR2Q07786 357 aa1.08□□□□□ -2.24
CDC39YCR093W RAX1Q08760 435 aa1.08□□□□□ -2.24
CDC39YCR093W SNX3Q08826 162 aaKnown RBP1.08□□□□□ -2.24
CDC39YCR093W DCP1Q12517 231 aaPredicted RBP1.08□□□□□ -2.24
CDC39YCR093W TY4B-HP0C2J7 1802 aa1.08□□□□□ -2.24
CDC39YCR093W TY4B-JP47024 1803 aa1.08□□□□□ -2.24
CDC39YCR093W MSI1P13712 422 aa1.08□□□□□ -2.24
CDC39YCR093W FAA1P30624 700 aaKnown RBP1.08□□□□□ -2.24
CDC39YCR093W TCD1P38756 429 aa1.08□□□□□ -2.24
CDC39YCR093W SAS2P40963 338 aa1.08□□□□□ -2.24
CDC39YCR093W MIC19P43594 170 aa1.08□□□□□ -2.24
CDC39YCR093W BIR1P47134 954 aa1.08□□□□□ -2.24
CDC39YCR093W MRM2P53123 320 aa1.08□□□□□ -2.24
CDC39YCR093W RNH201P53942 307 aa1.08□□□□□ -2.24
CDC39YCR093W LIP2Q06005 328 aa1.08□□□□□ -2.24
CDC39YCR093W UAF30Q08747 228 aa1.08□□□□□ -2.24
CDC39YCR093W ERP3Q12403 225 aa1.08□□□□□ -2.24
CDC39YCR093W FRE6Q12473 712 aa1.08□□□□□ -2.24
CDC39YCR093W RPL1AP0CX43 217 aaKnown RBP1.07□□□□□ -2.24
CDC39YCR093W RPL1BP0CX44 217 aaKnown RBP1.07□□□□□ -2.24
CDC39YCR093W MAS2P11914 482 aa1.07□□□□□ -2.24
CDC39YCR093W ERD1P16151 362 aa1.07□□□□□ -2.24
CDC39YCR093W UBA1P22515 1024 aaKnown RBP1.07□□□□□ -2.24
CDC39YCR093W GIT1P25346 518 aa1.07□□□□□ -2.24
CDC39YCR093W YCR043CP25361 127 aa1.07□□□□□ -2.24
CDC39YCR093W RPL16BP26785 198 aaKnown RBP1.07□□□□□ -2.24
CDC39YCR093W YSC83P32792 385 aa1.07□□□□□ -2.24
CDC39YCR093W CSE1P33307 960 aa1.07□□□□□ -2.24
CDC39YCR093W GPI18P38211 433 aa1.07□□□□□ -2.24
CDC39YCR093W SPP381P38282 291 aaPredicted RBP1.07□□□□□ -2.24
CDC39YCR093W FAA2P39518 744 aa1.07□□□□□ -2.24
CDC39YCR093W AIM22P47051 409 aa1.07□□□□□ -2.24
CDC39YCR093W RET3P53600 189 aa1.07□□□□□ -2.24
CDC39YCR093W GPI15P53961 229 aa1.07□□□□□ -2.24
CDC39YCR093W FSH2Q05015 223 aa1.07□□□□□ -2.24
CDC39YCR093W RIF2Q06208 395 aa1.07□□□□□ -2.24
CDC39YCR093W MRPL35Q06678 367 aa1.07□□□□□ -2.24
CDC39YCR093W RTT109Q07794 436 aa1.07□□□□□ -2.24
CDC39YCR093W PER33Q12144 273 aa1.07□□□□□ -2.24
CDC39YCR093W AYT1Q12226 474 aa1.07□□□□□ -2.24
CDC39YCR093W SKS1Q12505 502 aa1.07□□□□□ -2.24
CDC39YCR093W TY3B-IQ7LHG5 1498 aaKnown RBP1.07□□□□□ -2.24
CDC39YCR093W TIR2P33890 251 aa1.07□□□□□ -2.24
CDC39YCR093W MYO3P36006 1272 aa1.07□□□□□ -2.24
CDC39YCR093W SBE22P38814 852 aa1.07□□□□□ -2.24
CDC39YCR093W SHY1P53266 389 aa1.07□□□□□ -2.24
CDC39YCR093W GOR1P53839 350 aa1.07□□□□□ -2.24
CDC39YCR093W SKI8Q02793 397 aaPredicted RBP1.07□□□□□ -2.24
CDC39YCR093W IRC4Q03036 179 aa1.07□□□□□ -2.24
CDC39YCR093W URC2Q04411 772 aa1.07□□□□□ -2.24
CDC39YCR093W BCH1Q05029 724 aa1.07□□□□□ -2.24
CDC39YCR093W COQ9Q05779 260 aa1.07□□□□□ -2.24
CDC39YCR093W YDL114WQ07530 308 aa1.07□□□□□ -2.24
CDC39YCR093W DAP1Q12091 152 aa1.07□□□□□ -2.24
CDC39YCR093W SKI3P17883 1432 aaKnown RBP1.07□□□□□ -2.24
CDC39YCR093W TY1B-AO13527 1196 aaKnown RBP1.07□□□□□ -2.24
CDC39YCR093W CIN8P27895 1000 aa1.07□□□□□ -2.24
CDC39YCR093W SKG6P32900 734 aaPredicted RBP1.07□□□□□ -2.24
CDC39YCR093W RPC25P35718 212 aa1.07□□□□□ -2.24
CDC39YCR093W YHR035WP38769 630 aa1.07□□□□□ -2.24
CDC39YCR093W ATG7P38862 630 aa1.07□□□□□ -2.24
CDC39YCR093W YIR035CP40579 254 aa1.07□□□□□ -2.24
CDC39YCR093W MOB2P43563 287 aa1.07□□□□□ -2.24
CDC39YCR093W MPP10P47083 593 aaKnown RBP1.07□□□□□ -2.24
CDC39YCR093W LIA1P47120 325 aaKnown RBP1.07□□□□□ -2.24
CDC39YCR093W YGR168CP53293 376 aa1.07□□□□□ -2.24
CDC39YCR093W YGR266WP53326 701 aa1.07□□□□□ -2.24
CDC39YCR093W MPP6P53725 186 aaPredicted RBP1.07□□□□□ -2.24
CDC39YCR093W YNR068CP53754 272 aa1.07□□□□□ -2.24
CDC39YCR093W NUP116Q02630 1113 aa1.07□□□□□ -2.24
CDC39YCR093W IPK1Q06667 281 aa1.07□□□□□ -2.24
CDC39YCR093W RRD2Q12461 358 aa1.07□□□□□ -2.24
CDC39YCR093W CBP2P03874 630 aaPredicted RBP1.07□□□□□ -2.24
CDC39YCR093W DAL82P21705 255 aa1.07□□□□□ -2.24
CDC39YCR093W DCC1P25559 380 aa1.07□□□□□ -2.24
CDC39YCR093W NUP2P32499 720 aa1.07□□□□□ -2.24
CDC39YCR093W MRPL6P32904 214 aa1.07□□□□□ -2.24
CDC39YCR093W GEX2P36173 615 aa1.07□□□□□ -2.24
CDC39YCR093W JLP2P40206 208 aa1.07□□□□□ -2.24
CDC39YCR093W MST27P53176 234 aa1.07□□□□□ -2.24
CDC39YCR093W YNL260CP53846 198 aa1.07□□□□□ -2.24
CDC39YCR093W ASI3P53983 676 aa1.07□□□□□ -2.24
CDC39YCR093W SCW10Q04951 389 aa1.07□□□□□ -2.24
CDC39YCR093W YLR413WQ06689 675 aa1.07□□□□□ -2.24
CDC39YCR093W VIK1Q12045 647 aa1.07□□□□□ -2.24
CDC39YCR093W SSK22P25390 1331 aaPredicted RBP1.07□□□□□ -2.24
CDC39YCR093W SUC2P00724 532 aa1.07□□□□□ -2.24
CDC39YCR093W MSS116P15424 664 aaKnown RBP1.07□□□□□ -2.24
CDC39YCR093W CDC23P16522 626 aa1.07□□□□□ -2.24
CDC39YCR093W SLY1P22213 666 aa1.07□□□□□ -2.24
Retrieved 100 of 5,963 RNA–protein pairs in 127.9 ms