RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 Q4G0T1 1027 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 PIK3AP1Q6ZUJ8 805 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 KRT25Q7Z3Z0 450 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 FAM228AQ86W67 206 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 NPAS4Q8IUM7 802 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 CRIPAKQ8N1N5 446 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 DAGLBQ8NCG7 672 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 FAM167AQ96KS9 214 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 SCLT1Q96NL6 688 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 PHF20Q9BVI0 1012 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 IGFLR1Q9H665 355 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 UBE2ZQ9H832 354 aaPredicted RBP11.6□□□□□ -0.55
SCN1A-222ENST00000642141 RC3H2Q9HBD1 1191 aaKnown RBP11.6□□□□□ -0.55
SCN1A-222ENST00000642141 HCSTQ9UBK5 93 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 SEPT9Q9UHD8 586 aaPredicted RBP11.6□□□□□ -0.55
SCN1A-222ENST00000642141 SQORQ9Y6N5 450 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 KDM3AQ9Y4C1 1321 aa11.6□□□□□ -0.55
SCN1A-222ENST00000642141 TBKBP1A7MCY6 615 aa11.59□□□□□ -0.55
SCN1A-222ENST00000642141 EML1O00423 815 aa11.59□□□□□ -0.55
SCN1A-222ENST00000642141 GPR182O15218 404 aa11.59□□□□□ -0.55
SCN1A-222ENST00000642141 MAGEB2O15479 319 aa11.59□□□□□ -0.55
SCN1A-222ENST00000642141 MARCH6O60337 910 aa11.59□□□□□ -0.55
SCN1A-222ENST00000642141 CCNT1O60563 726 aaKnown RBP11.59□□□□□ -0.55
SCN1A-222ENST00000642141 STAG3L1P0CL83 205 aa11.59□□□□□ -0.55
SCN1A-222ENST00000642141 FGFR1P11362 822 aa11.59□□□□□ -0.55
SCN1A-222ENST00000642141 FDPSP14324 419 aaKnown RBP11.59□□□□□ -0.55
SCN1A-222ENST00000642141 DNAJB1P25685 340 aa11.59□□□□□ -0.55
SCN1A-222ENST00000642141 GTF2F1P35269 517 aaKnown RBP eCLIP11.59□□□□□ -0.55
SCN1A-222ENST00000642141 SARSP49591 514 aaKnown RBP11.59□□□□□ -0.55
SCN1A-222ENST00000642141 JAK3P52333 1124 aa11.59□□□□□ -0.55
SCN1A-222ENST00000642141 TBC1D8BQ0IIM8 1120 aa11.59□□□□□ -0.55
SCN1A-222ENST00000642141 NR5A1Q13285 461 aa11.59□□□□□ -0.55
SCN1A-222ENST00000642141 CLUL1Q15846 466 aa11.59□□□□□ -0.55
SCN1A-222ENST00000642141 EARS2Q5JPH6 523 aaKnown RBP11.59□□□□□ -0.55
SCN1A-222ENST00000642141 SPOUT1Q5T280 376 aaKnown RBP11.59□□□□□ -0.55
SCN1A-222ENST00000642141 GALNT17Q6IS24 598 aa11.59□□□□□ -0.55
SCN1A-222ENST00000642141 RNF169Q8NCN4 708 aa11.59□□□□□ -0.55
SCN1A-222ENST00000642141 ETNPPLQ8TBG4 499 aa11.59□□□□□ -0.55
SCN1A-222ENST00000642141 CLP1Q92989 425 aaKnown RBP11.59□□□□□ -0.55
SCN1A-222ENST00000642141 MAP7D2Q96T17 732 aa11.59□□□□□ -0.55
SCN1A-222ENST00000642141 C11orf84Q9BUA3 381 aaPredicted RBP11.59□□□□□ -0.55
SCN1A-222ENST00000642141 C22orf23Q9BZE7 217 aa11.59□□□□□ -0.55
SCN1A-222ENST00000642141 ADAMTS10Q9H324 1103 aa11.59□□□□□ -0.55
SCN1A-222ENST00000642141 CEP131Q9UPN4 1083 aa11.59□□□□□ -0.55
SCN1A-222ENST00000642141 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.58□□□□□ -0.56
SCN1A-222ENST00000642141 JAK2O60674 1132 aa11.58□□□□□ -0.56
SCN1A-222ENST00000642141 STBD1O95210 358 aa11.58□□□□□ -0.56
SCN1A-222ENST00000642141 RB1P06400 928 aa11.58□□□□□ -0.56
SCN1A-222ENST00000642141 XBP1P17861 261 aa11.58□□□□□ -0.56
SCN1A-222ENST00000642141 TMOD1P28289 359 aa11.58□□□□□ -0.56
SCN1A-222ENST00000642141 SFNP31947 248 aa11.58□□□□□ -0.56
SCN1A-222ENST00000642141 ANAPC15P60006 121 aa11.58□□□□□ -0.56
SCN1A-222ENST00000642141 ANKRD1Q15327 319 aa11.58□□□□□ -0.56
SCN1A-222ENST00000642141 PLA2G4FQ68DD2 849 aa11.58□□□□□ -0.56
SCN1A-222ENST00000642141 SLC24A5Q71RS6 500 aa11.58□□□□□ -0.56
SCN1A-222ENST00000642141 CMTR2Q8IYT2 770 aaKnown RBP11.58□□□□□ -0.56
SCN1A-222ENST00000642141 ZNF579Q8NAF0 562 aaKnown RBP11.58□□□□□ -0.56
SCN1A-222ENST00000642141 KLHL23Q8NBE8 558 aa11.58□□□□□ -0.56
SCN1A-222ENST00000642141 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.58□□□□□ -0.56
SCN1A-222ENST00000642141 NLRP7Q8WX94 980 aa11.58□□□□□ -0.56
SCN1A-222ENST00000642141 NSUN3Q9H649 340 aaKnown RBP11.58□□□□□ -0.56
SCN1A-222ENST00000642141 RGS18Q9NS28 235 aa11.58□□□□□ -0.56
SCN1A-222ENST00000642141 CLDND1Q9NY35 253 aa11.58□□□□□ -0.56
SCN1A-222ENST00000642141 PLAGL2Q9UPG8 496 aa11.58□□□□□ -0.56
SCN1A-222ENST00000642141 PCDHGC5Q9Y5F6 944 aa11.58□□□□□ -0.56
SCN1A-222ENST00000642141 EVPLQ92817 2033 aa11.58□□□□□ -0.56
SCN1A-222ENST00000642141 LOXHD1Q8IVV2 1947 aa11.58□□□□□ -0.56
SCN1A-222ENST00000642141 BDP1A6H8Y1 2624 aa11.57□□□□□ -0.56
SCN1A-222ENST00000642141 C9IYK1 514 aa11.57□□□□□ -0.56
SCN1A-222ENST00000642141 C5orf67F2Z3F1 127 aa11.57□□□□□ -0.56
SCN1A-222ENST00000642141 LINC01565O15544 149 aa11.57□□□□□ -0.56
SCN1A-222ENST00000642141 ITGB1P05556 798 aa11.57□□□□□ -0.56
SCN1A-222ENST00000642141 HYAL1Q12794 435 aa11.57□□□□□ -0.56
SCN1A-222ENST00000642141 CAMK1Q14012 370 aa11.57□□□□□ -0.56
SCN1A-222ENST00000642141 LONRF3Q496Y0 759 aa11.57□□□□□ -0.56
SCN1A-222ENST00000642141 TIGD5Q53EQ6 642 aa11.57□□□□□ -0.56
SCN1A-222ENST00000642141 ERICH6BQ5W0A0 696 aa11.57□□□□□ -0.56
SCN1A-222ENST00000642141 PTCRAQ6ISU1 281 aaPredicted RBP11.57□□□□□ -0.56
SCN1A-222ENST00000642141 NEK8Q86SG6 692 aa11.57□□□□□ -0.56
SCN1A-222ENST00000642141 KSR1Q8IVT5 923 aa11.57□□□□□ -0.56
SCN1A-222ENST00000642141 LINC01465Q8N7H1 131 aa11.57□□□□□ -0.56
SCN1A-222ENST00000642141 MBOAT7Q96N66 472 aa11.57□□□□□ -0.56
SCN1A-222ENST00000642141 CD320Q9NPF0 282 aa11.57□□□□□ -0.56
SCN1A-222ENST00000642141 BMP2KQ9NSY1 1161 aaPredicted RBP11.57□□□□□ -0.56
SCN1A-222ENST00000642141 RAPGEFL1Q9UHV5 662 aa11.57□□□□□ -0.56
SCN1A-222ENST00000642141 STK36Q9NRP7 1315 aa11.57□□□□□ -0.56
SCN1A-222ENST00000642141 TTC3P53804 2025 aa11.57□□□□□ -0.56
SCN1A-222ENST00000642141 COL4A6Q14031 1691 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 ZBTB39O15060 712 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 IL9P15248 144 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 EIF4BP23588 611 aaKnown RBP11.56□□□□□ -0.56
SCN1A-222ENST00000642141 IRS1P35568 1242 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 KRT2P35908 639 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 GPC3P51654 580 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 NPEPPSP55786 919 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 GUCY1B3Q02153 619 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 DLX2Q07687 328 aaPredicted RBP11.56□□□□□ -0.56
SCN1A-222ENST00000642141 DSC3Q14574 896 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 TARBP2Q15633 366 aaKnown RBP11.56□□□□□ -0.56
SCN1A-222ENST00000642141 LEXMQ3ZCV2 418 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms