RNA–Protein interactions for RNA: ENST00000638755.1

PAX6-238, Transcript of paired box 6, human

TSL 5 BASIC

Gene PAX6, Length 1,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PAX6-238	ENST00000638755	SIT1	Q9Y3P8	196 aa		13.49	□□□□□ -0.25
PAX6-238	ENST00000638755	FAM208B	Q5VWN6	2430 aa		13.49	□□□□□ -0.25
PAX6-238	ENST00000638755	FRMPD4	Q14CM0	1322 aa		13.48	□□□□□ -0.25
PAX6-238	ENST00000638755	POTEM	A6NI47	508 aa		13.48	□□□□□ -0.25
PAX6-238	ENST00000638755	PRR5-ARHGAP8	B1AHC4	643 aa		13.48	□□□□□ -0.25
PAX6-238	ENST00000638755	NT5C1B-RDH14	C9J2C7	533 aa		13.48	□□□□□ -0.25
PAX6-238	ENST00000638755	ARHGAP8	P85298	464 aa		13.48	□□□□□ -0.25
PAX6-238	ENST00000638755	COL9A3	Q14050	684 aa	Predicted RBP	13.48	□□□□□ -0.25
PAX6-238	ENST00000638755	PLCB4	Q15147	1175 aa		13.48	□□□□□ -0.25
PAX6-238	ENST00000638755	MCMDC2	Q4G0Z9	681 aa		13.48	□□□□□ -0.25
PAX6-238	ENST00000638755	POTEG	Q6S5H5	508 aa		13.48	□□□□□ -0.25
PAX6-238	ENST00000638755	ZNF589	Q86UQ0	364 aa	Predicted RBP	13.48	□□□□□ -0.25
PAX6-238	ENST00000638755	ABI1	Q8IZP0	508 aa		13.48	□□□□□ -0.25
PAX6-238	ENST00000638755	LRRC43	Q8N309	656 aa		13.48	□□□□□ -0.25
PAX6-238	ENST00000638755	NME8	Q8N427	588 aa		13.48	□□□□□ -0.25
PAX6-238	ENST00000638755	GPR161	Q8N6U8	529 aa	Known RBP	13.48	□□□□□ -0.25
PAX6-238	ENST00000638755	PPP1R16B	Q96T49	567 aa		13.48	□□□□□ -0.25
PAX6-238	ENST00000638755	RTKN	Q9BST9	563 aa		13.48	□□□□□ -0.25
PAX6-238	ENST00000638755	DLGAP2	Q9P1A6	1054 aa		13.48	□□□□□ -0.25
PAX6-238	ENST00000638755	DENND4A	Q7Z401	1863 aa		13.48	□□□□□ -0.25
PAX6-238	ENST00000638755	PKD1L2	Q7Z442	2459 aa		13.48	□□□□□ -0.25
PAX6-238	ENST00000638755	ZMYM6	O95789	1325 aa		13.47	□□□□□ -0.25
PAX6-238	ENST00000638755	BAZ2B	Q9UIF8	2168 aa	Known RBP	13.47	□□□□□ -0.25
PAX6-238	ENST00000638755	SMIM35	A0A1B0GVV1	85 aa		13.47	□□□□□ -0.25
PAX6-238	ENST00000638755		B4E1Z4	1266 aa		13.47	□□□□□ -0.25
PAX6-238	ENST00000638755	GPR182	O15218	404 aa		13.47	□□□□□ -0.25
PAX6-238	ENST00000638755	KCNA2	P16389	499 aa		13.47	□□□□□ -0.25
PAX6-238	ENST00000638755	METAP2	P50579	478 aa	Known RBP eCLIP	13.47	□□□□□ -0.25
PAX6-238	ENST00000638755	FAM189B	P81408	668 aa		13.47	□□□□□ -0.25
PAX6-238	ENST00000638755	LMNB2	Q03252	620 aa		13.47	□□□□□ -0.25
PAX6-238	ENST00000638755	TRAF1	Q13077	416 aa		13.47	□□□□□ -0.25
PAX6-238	ENST00000638755	PCNX4	Q63HM2	1172 aa		13.47	□□□□□ -0.25
PAX6-238	ENST00000638755	GPR149	Q86SP6	731 aa		13.47	□□□□□ -0.25
PAX6-238	ENST00000638755	VPS52	Q8N1B4	723 aa		13.47	□□□□□ -0.25
PAX6-238	ENST00000638755	SLC39A11	Q8N1S5	342 aa		13.47	□□□□□ -0.25
PAX6-238	ENST00000638755	RNF169	Q8NCN4	708 aa		13.47	□□□□□ -0.25
PAX6-238	ENST00000638755	SECISBP2L	Q93073	1101 aa	Known RBP	13.47	□□□□□ -0.25
PAX6-238	ENST00000638755	PCYT2	Q99447	389 aa		13.47	□□□□□ -0.25
PAX6-238	ENST00000638755	AZI2	Q9H6S1	392 aa		13.47	□□□□□ -0.25
PAX6-238	ENST00000638755	ELAC1	Q9H777	363 aa	Known RBP	13.47	□□□□□ -0.25
PAX6-238	ENST00000638755	MAD2L2	Q9UI95	211 aa		13.47	□□□□□ -0.25
PAX6-238	ENST00000638755	USP18	Q9UMW8	372 aa		13.47	□□□□□ -0.25
PAX6-238	ENST00000638755	ZNF213	O14771	459 aa		13.46	□□□□□ -0.25
PAX6-238	ENST00000638755	MX1	P20591	662 aa		13.46	□□□□□ -0.25
PAX6-238	ENST00000638755	GBP2	P32456	591 aa	Predicted RBP	13.46	□□□□□ -0.25
PAX6-238	ENST00000638755	NONO	Q15233	471 aa	Known RBP eCLIP	13.46	□□□□□ -0.25
PAX6-238	ENST00000638755	LETM2	Q2VYF4	491 aa		13.46	□□□□□ -0.25
PAX6-238	ENST00000638755	ODR4	Q5SWX8	454 aa		13.46	□□□□□ -0.25
PAX6-238	ENST00000638755	MTHFD1L	Q6UB35	978 aa		13.46	□□□□□ -0.25
PAX6-238	ENST00000638755	MAML2	Q8IZL2	1156 aa	Predicted RBP	13.46	□□□□□ -0.25
PAX6-238	ENST00000638755	SMARCC2	Q8TAQ2	1214 aa		13.46	□□□□□ -0.25
PAX6-238	ENST00000638755	GPR152	Q8TDT2	470 aa		13.46	□□□□□ -0.25
PAX6-238	ENST00000638755	SLC22A17	Q8WUG5	538 aa		13.46	□□□□□ -0.25
PAX6-238	ENST00000638755	PIBF1	Q8WXW3	757 aa		13.46	□□□□□ -0.25
PAX6-238	ENST00000638755	TNPO1	Q92973	898 aa	Known RBP	13.46	□□□□□ -0.25
PAX6-238	ENST00000638755	SFXN1	Q9H9B4	322 aa		13.46	□□□□□ -0.25
PAX6-238	ENST00000638755	RNF19A	Q9NV58	838 aa		13.46	□□□□□ -0.25
PAX6-238	ENST00000638755	ZSWIM5	Q9P217	1185 aa		13.46	□□□□□ -0.25
PAX6-238	ENST00000638755	ANKRD11	Q6UB99	2663 aa	Predicted RBP	13.45	□□□□□ -0.26
PAX6-238	ENST00000638755	HOXA2	O43364	376 aa		13.45	□□□□□ -0.26
PAX6-238	ENST00000638755	N4BP1	O75113	896 aa	Known RBP	13.45	□□□□□ -0.26
PAX6-238	ENST00000638755	LRRN2	O75325	713 aa		13.45	□□□□□ -0.26
PAX6-238	ENST00000638755	GLUL	P15104	373 aa		13.45	□□□□□ -0.26
PAX6-238	ENST00000638755	KLRC1	P26715	233 aa		13.45	□□□□□ -0.26
PAX6-238	ENST00000638755	ALDH7A1	P49419	539 aa	Known RBP	13.45	□□□□□ -0.26
PAX6-238	ENST00000638755	SLC35G1	Q2M3R5	365 aa		13.45	□□□□□ -0.26
PAX6-238	ENST00000638755	PPM1J	Q5JR12	505 aa		13.45	□□□□□ -0.26
PAX6-238	ENST00000638755	IFIT1B	Q5T764	474 aa	Known RBP	13.45	□□□□□ -0.26
PAX6-238	ENST00000638755	USP17L6P	Q6QN14	398 aa		13.45	□□□□□ -0.26
PAX6-238	ENST00000638755	SLC44A3	Q8N4M1	653 aa		13.45	□□□□□ -0.26
PAX6-238	ENST00000638755	EVI5L	Q96CN4	794 aa		13.45	□□□□□ -0.26
PAX6-238	ENST00000638755	GPRASP2	Q96D09	838 aa		13.45	□□□□□ -0.26
PAX6-238	ENST00000638755	TMEM169	Q96HH4	297 aa		13.45	□□□□□ -0.26
PAX6-238	ENST00000638755	FOXQ1	Q9C009	403 aa		13.45	□□□□□ -0.26
PAX6-238	ENST00000638755	FASN	P49327	2511 aa	Known RBP	13.44	□□□□□ -0.26
PAX6-238	ENST00000638755	PNMA6F	A0A0J9YX94	578 aa		13.44	□□□□□ -0.26
PAX6-238	ENST00000638755	SPTLC1	O15269	473 aa		13.44	□□□□□ -0.26
PAX6-238	ENST00000638755	SRF	P11831	508 aa		13.44	□□□□□ -0.26
PAX6-238	ENST00000638755	NMI	Q13287	307 aa	Predicted RBP	13.44	□□□□□ -0.26
PAX6-238	ENST00000638755	KIZ	Q2M2Z5	673 aa		13.44	□□□□□ -0.26
PAX6-238	ENST00000638755	PHLDB3	Q6NSJ2	640 aa		13.44	□□□□□ -0.26
PAX6-238	ENST00000638755	FAM43B	Q6ZT52	329 aa	Predicted RBP	13.44	□□□□□ -0.26
PAX6-238	ENST00000638755	FAM228A	Q86W67	206 aa		13.44	□□□□□ -0.26
PAX6-238	ENST00000638755	KIAA0319L	Q8IZA0	1049 aa		13.44	□□□□□ -0.26
PAX6-238	ENST00000638755	ATRIP	Q8WXE1	791 aa		13.44	□□□□□ -0.26
PAX6-238	ENST00000638755	CDHR1	Q96JP9	859 aa		13.44	□□□□□ -0.26
PAX6-238	ENST00000638755	OSMR	Q99650	979 aa		13.44	□□□□□ -0.26
PAX6-238	ENST00000638755	UBAC1	Q9BSL1	405 aa		13.44	□□□□□ -0.26
PAX6-238	ENST00000638755	ZBP1	Q9H171	429 aa		13.44	□□□□□ -0.26
PAX6-238	ENST00000638755	ARHGEF3	Q9NR81	526 aa		13.44	□□□□□ -0.26
PAX6-238	ENST00000638755	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.44	□□□□□ -0.26
PAX6-238	ENST00000638755	SPATA6	Q9NWH7	488 aa	Predicted RBP	13.44	□□□□□ -0.26
PAX6-238	ENST00000638755	C2orf16	Q68DN1	1984 aa		13.43	□□□□□ -0.26
PAX6-238	ENST00000638755	PALM3	A6NDB9	673 aa	Predicted RBP	13.43	□□□□□ -0.26
PAX6-238	ENST00000638755	HOXB3	P14651	431 aa	Predicted RBP	13.43	□□□□□ -0.26
PAX6-238	ENST00000638755	ITGB5	P18084	799 aa		13.43	□□□□□ -0.26
PAX6-238	ENST00000638755	KCNA4	P22459	653 aa		13.43	□□□□□ -0.26
PAX6-238	ENST00000638755	BCAR1	P56945	870 aa		13.43	□□□□□ -0.26
PAX6-238	ENST00000638755	CSTF1	Q05048	431 aa	Known RBP	13.43	□□□□□ -0.26
PAX6-238	ENST00000638755	DMWD	Q09019	674 aa		13.43	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms